Anig004858.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- JRK
- Assembly
- GCA_947507805.1
- Location
- OX382316.1:625325-627436[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 3.3e-07 30.5 0.1 2 43 16 57 15 59 0.87
Sequence Information
- Coding Sequence
- ATGGTTCGTACATACAAAAGAAAAACGAATAGACAAAAATGGGACGAAGCAGACATGAGAAGAGCAGTGTCGGCTGTGCTTCTCAACAAAATGGGATTTCTCAGGGCTTCTGCTACTTATACTGTGCCAAAATCAACGTTAGAACGACGAGTTAAAGAAGCTCGCCAGTCTCAGAATGCAGATACAGATTCAGATAATGACTATGGGAAAAAAGGTTTAGggcacttcaaaccagtgtttacaaaagagcaagaagaagagttggccacttatgtaaaaatgatgcaatcccgattattcggaattactgggacagagctaaggatactagctttccaactagctataaaaaataatatcgagaatccctttaatcgagaagatggtatggcggggaaggactggcttagtgggtttctaaaacgccatccagatatatcatacaggcaaccagaaccaacttctgcggctagggcgatgggattcaatagagtcgctgtaaatagcttttttgatctattagaaagtgttgtggataaacatgcactgactgcagatagaatgtataacgtggatgaaacaggtataagcactgtaccaaaaagccagtccaaaattttatcactgaaaggacagaagcaagttggatgtctaacatcaggagaaagaggccagctagtgacagctgaaatatgttttagcgcgacgggagtatatttgccaccaatgctaatttatgccaggaaacgcatgaaaaatgagcttctagatggtgcaccagcaggcttttggggaacctgcagcgacaatggctggataacttgcccaatttttttcgattggttcaaacgtttcgtggactttacaaagccttctaaagataaaccagttttgcttatgttagacggtcacgtgtcccacaccaaaaatctggatctcatagattatgccagagaaaacagtgttatattgttgtgtacaccaccacattgcactcatagaattcaacccttggacgtgtcattcatgcggccgctaagtacatactacagtaatgaagtaaaaaagtggttaagagatcatcccggacgcgtagtaacttcgtaccaagttgcagacctttttgggaaagcttttatacaagcatcaactatgagcactgctataaatggttttaaaaaatgtggcatatggcctgttgacaggaatgttttcacagaagcagattttattgctgcggaaaccaccaaCACTGAGACCCTTGTGATTGAAGGCCTAAATACGCAAAATGCAGGAGACGTACCAACACCATACTGCGAACCTTCATCGTCAGGAATTTCACAAGCAGCTCAATTGAATCCACCCGTATCAAACCCAAATAACTTATATGAACACGCTATGCCTACCAACTCTTCTGTGTCAGCTTCAATGGCTAGTCAAAACAGTCCTGAAAGACAAATTTCACAAGCAGTCCAATTAAATGTGTCTATTTTAAACCTCGATGAAAACATTTCTGAACCAATCATACCCGTCGTCCAAGACAACTTGAATCAACAAGCTATGTCCAGCTCCATGGTTTCAGTTTCTACACAGCCATTTGAACCTCTTGCGTCCACTTCAAGGGCTAAAGATAAAACTCCTGAAAGGCAAATTTTAAAAGAAAAAAGTTCATTTACAGTTACACCTGAAAATATTATGGCAATTCCCAAAGAATTAAGAACTAAGGAAAGACAAAAGAGAAAACGTGGGAAAACGGCTATACTTACAGATTCCCCTTACAAAAATGACTTGACTAAGGAAAAGAATGTAAAGGAAAGTAAGGAAAATAAGAAGAAGACTGCACCAAAGAAGAAAAACGACCAAAGAAAAATATTCAAACCAAATAATAAAAAAAAGGCTAAGAAACAAAAGCAAAGGGAAGTCACATTTACtagttcatctgaagaagacgaagatgactgtgcttgcatatattgtggttatttgtattcgcagtcaaatgagggttgggttgcgtgtagctcttgtgcgggttgggcacacaattcctgcgccggagtagacgaagatgatgacgaggcacacatttgtgcacaatgtttgcctgactaa
- Protein Sequence
- MVRTYKRKTNRQKWDEADMRRAVSAVLLNKMGFLRASATYTVPKSTLERRVKEARQSQNADTDSDNDYGKKGLGHFKPVFTKEQEEELATYVKMMQSRLFGITGTELRILAFQLAIKNNIENPFNREDGMAGKDWLSGFLKRHPDISYRQPEPTSAARAMGFNRVAVNSFFDLLESVVDKHALTADRMYNVDETGISTVPKSQSKILSLKGQKQVGCLTSGERGQLVTAEICFSATGVYLPPMLIYARKRMKNELLDGAPAGFWGTCSDNGWITCPIFFDWFKRFVDFTKPSKDKPVLLMLDGHVSHTKNLDLIDYARENSVILLCTPPHCTHRIQPLDVSFMRPLSTYYSNEVKKWLRDHPGRVVTSYQVADLFGKAFIQASTMSTAINGFKKCGIWPVDRNVFTEADFIAAETTNTETLVIEGLNTQNAGDVPTPYCEPSSSGISQAAQLNPPVSNPNNLYEHAMPTNSSVSASMASQNSPERQISQAVQLNVSILNLDENISEPIIPVVQDNLNQQAMSSSMVSVSTQPFEPLASTSRAKDKTPERQILKEKSSFTVTPENIMAIPKELRTKERQKRKRGKTAILTDSPYKNDLTKEKNVKESKENKKKTAPKKKNDQRKIFKPNNKKKAKKQKQREVTFTSSSEEDEDDCACIYCGYLYSQSNEGWVACSSCAGWAHNSCAGVDEDDDEAHICAQCLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172795;
- 90% Identity
- iTF_00124191;
- 80% Identity
- -