Tcit017459.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- JRK
- Assembly
- GCA_963921375.1
- Location
- OY992787.1:21514468-21516579[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-09 1.1e-06 29.7 0.1 2 40 16 54 15 59 0.84
Sequence Information
- Coding Sequence
- ATGGTTcgtacatacaaaagaaaaacgaaTAGACAAAAATGGGACGAAGCAGACATGAGAAGAGCAGTGTCGGCTGTGCTTCTCAACAAAATGGGATTTCTCAGGGCGTCTGCTACTTATACTGTGCCAAAATCAACGTTAGAACGACGAGTTAAAAAAGCTCGCCAGTCTCAGAATGCAGATACAGATTCAGATAATGACTATGGGAAAAAAGGTTTAGGGCACTTCAAACCAGTGTTTACAAAAGAGCAAGAAGAAGAGTTGGCCACTTATGTAAAAATGATGCAATCCCGATTATTCGGAATTACTGGGACAGAGCTAAGGATACTAGCTTTCCAACtagctataaaaaataatatcgaGAATCCCTTTAATCGAGAAGATGGTATGGCGGGGAAGGACTGGCTTAGTGGGTTTCTAAAACGCCATCCAGATATATCATACAGGCAACCAGAACCAACTTCTGCGGCTAGGGCGATGGGATTCAATAGAGTCGCTGTAAATAGCTTTTTTGATCTATTAGAAAGTGTTGTGGATAAACATGCACTGACTGCAGATAGAATGTATAACGTGGATGAAACAGGTATAAGCACTGTACCAAAAAGCCAGTCCAAAATTTTATCACTGAAAGGACAGAAGCAAGTTGGATGTCTAACATCAGGAGAAAGAGGCCAGCTAGTGACAGCTGAAATATGTTTTAGCGCGACGGGAGTATATTTGCCACCAATGCTAATTTATGCCAGGAAACGCATGAAAAATGAGCTTCTAGATGGTGCACCAGCAGGCTTTTGGGGAACCTGCAGCGACAATGGCTGGATAACTTGCCCAATTTTTTTCGATTGGTTCAAACGTTTCGTGGACTTTACAAAGCCTTCTAAAGATAAACCAGTTTTGCTTATGTTAGACGGTCACGTGTCCCACACCAAAAATCTGGATCTCATAGATTATGCCAGAGAAAACAGTGTTATATTGTTGTGTACACCACCACATTGCACTCATAGAATTCAACCCTTGGACGTGTCATTCATGCGGCCACTAAGTACATACTACAGTAATGAAGTAAAAAAGTGGTTAAGAGATCATCCCGGACGCGTAGTAACTTCGTACCAAGTTGCAGACCTTTTTGGGAAAGCTTTTATACAAGCATCAACTATGAGCACTGCTATAAATGGTTTTAAAAAATGTGGCATATGGCCTGTTGACAGGAATGTTTTCACAGATGCAGATTTTATTGCTGCGGAAACCACCAACACTGAGACCCTTGTGATTGAAGGCCTAAATACGCAAAATGCAGGAGACGTaccaacaccatactgcgaaccTTCATCGTCAGGAATTTCACAAGCAGCTCAATTGAATCCGCCCGTATCAAACCCAAATAACTTATATGAACACGCTATGCCTACCAACTCTTCTGTGTCAGCTTCAATGGCTAGTCAAAACAGTCCTGAAAGACAAATTTCACAAGCAGTCCAATTAAATGTGTCTATTTTAAACCTCGATGAAAACATTTCTGAACCAATCATACCCGTCGTCCAAGACAACTTGAGTCAACAAGCTATGTCCAGCTCCATGGTTTCAGTTTCTACACAGCCATTTGAACCTCTTGCGTCCACTTCAAGGGCTAAAGATAAAACTCCTGAAAGgcaaattttaaaagaaaaaagttcaTTTACAGTTACACCTGAAAATATTATGGCAATTCCCAAAGAATTAAGAACTAAGGAAAGACAAAAGAGAAAACGTGGGAAAACGGCTATACTTACAGATTCCCCTTACAAAAATGACTTGACTAAGGAAAAGAATGCAAAGGAAAGTAAGGAAAATAAGAAGAAGACTGCACCAAAGAAGAAAAACGACCAAAGAAAAATATTCaaaccaaataataaaaaaaaggctaAGAAACAAAAGCAAAGGGAAGTCACATTTACTAGTTCATCGGAAGAAGACGAAGATGACTGTGCTTGCATATATTGTGGTTATTTGTATTCGCAGTCAAATGAGGGTTGGGTTGCGTGTAGCTCTTGTGCGGGTTGGGCACACAATTCCTGCGCCGGAGTAGACGAAGATGATGACGAGGCACACATTTGTGCACAATGTTTGCCTGACTAA
- Protein Sequence
- MVRTYKRKTNRQKWDEADMRRAVSAVLLNKMGFLRASATYTVPKSTLERRVKKARQSQNADTDSDNDYGKKGLGHFKPVFTKEQEEELATYVKMMQSRLFGITGTELRILAFQLAIKNNIENPFNREDGMAGKDWLSGFLKRHPDISYRQPEPTSAARAMGFNRVAVNSFFDLLESVVDKHALTADRMYNVDETGISTVPKSQSKILSLKGQKQVGCLTSGERGQLVTAEICFSATGVYLPPMLIYARKRMKNELLDGAPAGFWGTCSDNGWITCPIFFDWFKRFVDFTKPSKDKPVLLMLDGHVSHTKNLDLIDYARENSVILLCTPPHCTHRIQPLDVSFMRPLSTYYSNEVKKWLRDHPGRVVTSYQVADLFGKAFIQASTMSTAINGFKKCGIWPVDRNVFTDADFIAAETTNTETLVIEGLNTQNAGDVPTPYCEPSSSGISQAAQLNPPVSNPNNLYEHAMPTNSSVSASMASQNSPERQISQAVQLNVSILNLDENISEPIIPVVQDNLSQQAMSSSMVSVSTQPFEPLASTSRAKDKTPERQILKEKSSFTVTPENIMAIPKELRTKERQKRKRGKTAILTDSPYKNDLTKEKNAKESKENKKKTAPKKKNDQRKIFKPNNKKKAKKQKQREVTFTSSSEEDEDDCACIYCGYLYSQSNEGWVACSSCAGWAHNSCAGVDEDDDEAHICAQCLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172795;
- 90% Identity
- iTF_00124191;
- 80% Identity
- -