Acap004924.1
Basic Information
- Insect
- Asbolis capucinus
- Gene Symbol
- -
- Assembly
- GCA_018249125.1
- Location
- DWJZ01002171.1:11706-15152[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.016 16.3 3.1 1 23 152 175 152 175 0.98 2 17 4.2e-05 0.0035 18.4 1.0 1 23 184 207 184 207 0.96 3 17 0.0087 0.72 11.1 0.7 2 23 220 242 220 242 0.97 4 17 0.0011 0.089 14.0 2.4 1 23 251 274 251 274 0.97 5 17 2.3e-05 0.0019 19.2 1.9 1 23 287 310 287 310 0.96 6 17 9.3e-05 0.0077 17.3 0.7 2 23 338 360 337 360 0.97 7 17 0.00025 0.02 16.0 3.5 2 23 370 392 369 392 0.97 8 17 0.017 1.4 10.2 0.8 2 19 397 414 396 417 0.92 9 17 0.00099 0.082 14.1 0.5 2 21 422 441 422 444 0.95 10 17 0.16 13 7.2 1.9 3 23 454 475 453 475 0.95 11 17 0.00029 0.024 15.8 4.9 1 23 480 503 480 503 0.96 12 17 6.9e-05 0.0057 17.7 3.0 2 23 516 538 515 538 0.96 13 17 0.25 21 6.5 1.8 1 23 563 586 563 587 0.94 14 17 3 2.5e+02 3.1 1.2 2 23 593 614 592 614 0.85 15 17 0.0028 0.24 12.6 1.9 2 23 618 639 618 639 0.98 16 17 0.015 1.3 10.3 0.2 1 23 705 727 705 727 0.97 17 17 0.19 16 6.9 2.0 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGTCTATTAAGGAGGAGAATGTTATagtaaaaattgaaaatgataatGATCGGAAAGATCCCACTTCATTCTTACCAGAAGAAGAAATGAGTTatgagattaaaaaaaagaaaaagaagaaaaagaaaaaagataaacAGGAAGATCCCTTCAAGGACATTGATGAGAAGACTCAGATCCCCTTAGCAGTAACTATATATGATGACACCAAGTTGGATCCGGAGGTCAATATCAAAGTGGAAAATATAGAAGTTGAATTGGATTTTAATGATTTTGCAAATGACAATGGGTTAATGGTTGAGGGTCCCCATAGTGAAGACAGCCAAGAACCAGAAGTTAAATTAGAACAGGATAATAAGGAAgcagttttattaacatttgagAGTATTATAcaggaaaataaattatttgggaTCAGTGATGGAACTATCGGTTTACCATCGGCTCCAAACTATGTCTGCAAAGTTTGCCACCTGGTTTTTCAATCacctaaaacattaaaaatgcatCAAAAAAGAAAACACAAAGTGTATCGTAGAGCATTCAAGCATATTTGTGATTATTGTGGCATGTCATATGAACAAAAGAATAGCCTGGTTGCtcatattaaaagaaaacatgGTCCTAATGCAACACCTGATGATAGAGAAGAACGGACTTGTGACATATGTGCTTTAGTTTTTAAGGGACTTAATCGGTTACGAATGCATATGAGGAGAAAACATGGATCTTTTGAGGATTCTTTTAAACATGTATGCCAGGACTGTGGTCTCACCTATGATAAACATAGAAGTTTAATAGTTCATATTCAACGTAAACAcaatactgataataaaaaagagGTTTTGGACCAGTGGTTTAATTGTCCATTCTGTCCTAAGGTATTCACTAGAAGAGAAACATATTCAAGACATGTGCAAAGGAAACATCGAATTGATGATGAAAATGAGAAACAAGATGTGAAACCGGATCTTCTGGGTAACTGCAAAAATGAGGAAACTGGAGAAATTACATGTAAAGAATGCCCTCTCGTTTTTTCAACAGTAAACTTTTTGAAACTACATATGAGAAGAAAGCACAATGCATTACGAGAAGATTTCCGACTCAAGTGTAAGATTTGTCATCtctcatataataaaattgagagTCTCAAAAGGCATATTCGAAGAAAACATGACAAGGGTTCTTATTGTGAAGTTTGTAATAAGCAATTTGAAACTAGAGAGCAGTACTTAAATCATTCGCATATGAAAGCGGTTAGGGAATGTACAATTTGTGGGTTGATCTTCGCGTCCAAAGGAGGTTTGGGGAAACATATGCGATGTATGCACAAAGTAGATGAACCGAAGACAGTGTTTTGTTCATTGTGCAATGAAGGATTTCATGATAAAAGACAACTTAAGCCTCATTATATGAAAGTCCATTTGAAAGTATCTTATACTTGTCACATctgtaaaaaacaatttaaagctAAAGAAAGTTATAGAAGGCATATTCTGTACAAGCATCCAATGGATAGTTATTCCGATAACAGCCAGCTTCAGAAATGTGAACACTGTCCAGAGACATTCAGGGACGAATTTGAATTGTGCAAGCATATTAATATTTCGCATGGTACAGAAATAAATTCTGGAGagcaaaatgatataaaaatagaaaaagaagaTCAAGATATCAAAGATTGCTTTCAATGCACAAAGTGTCCAGATAATTTCTTAACTTGGGAGCAGTTGCGGCTCCATTACGAACAGAATCACCACATGACAGAAGACACCCAGTGTCAAATATGTGGGGAAATAATGCCGACGAACGAACTGcagaaacatattaaaaatacacattcatTAGCTAAATGCAGATACTGCGAATTCCAAACCTCTAATCGTGCGAGTTTGACTCAACACATGCTGAGGCATAAAAATGCGACAACCTTGCATTGTGAATTCACTGGATGCAAATACAAGACGTTTTACGAAGTCGCAATGGAAAAGCATAAGCGAAAACACAGAGATATTGGAGTGAAGCTTCAATGCTCACAGTGTCCTTTCCAATCTATGAATAAGTACATTCTGAGATATCATGAAGAAGCCCATATGACTGGGAAAAAAAGGTACTCTTGCGACCAGTGCGATTATGCGACTATCTTGCCCGCGAATCTAGTACAACacaaatacaaacattcttcAGAAAAGAGGTTTAAATGCGAAGTATGTCCCTTcgcaacaaaatacaatacctCATTACGCTTCCACGTCAAGAAAAAACATTGTGATCTCCCTACTTTCAGTTAA
- Protein Sequence
- MSIKEENVIVKIENDNDRKDPTSFLPEEEMSYEIKKKKKKKKKKDKQEDPFKDIDEKTQIPLAVTIYDDTKLDPEVNIKVENIEVELDFNDFANDNGLMVEGPHSEDSQEPEVKLEQDNKEAVLLTFESIIQENKLFGISDGTIGLPSAPNYVCKVCHLVFQSPKTLKMHQKRKHKVYRRAFKHICDYCGMSYEQKNSLVAHIKRKHGPNATPDDREERTCDICALVFKGLNRLRMHMRRKHGSFEDSFKHVCQDCGLTYDKHRSLIVHIQRKHNTDNKKEVLDQWFNCPFCPKVFTRRETYSRHVQRKHRIDDENEKQDVKPDLLGNCKNEETGEITCKECPLVFSTVNFLKLHMRRKHNALREDFRLKCKICHLSYNKIESLKRHIRRKHDKGSYCEVCNKQFETREQYLNHSHMKAVRECTICGLIFASKGGLGKHMRCMHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHICKKQFKAKESYRRHILYKHPMDSYSDNSQLQKCEHCPETFRDEFELCKHINISHGTEINSGEQNDIKIEKEDQDIKDCFQCTKCPDNFLTWEQLRLHYEQNHHMTEDTQCQICGEIMPTNELQKHIKNTHSLAKCRYCEFQTSNRASLTQHMLRHKNATTLHCEFTGCKYKTFYEVAMEKHKRKHRDIGVKLQCSQCPFQSMNKYILRYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00887619; iTF_00971561; iTF_00970611; iTF_01082680; iTF_01439257; iTF_01438257;
- 80% Identity
- -