Mvio021509.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000002.1:5863304-5867415[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00017 0.015 16.3 3.1 1 23 152 175 152 175 0.98 2 18 3.6e-05 0.0032 18.4 1.0 1 23 184 207 184 207 0.96 3 18 0.0072 0.66 11.1 0.6 2 23 220 242 220 242 0.97 4 18 0.00072 0.065 14.3 1.1 1 23 251 274 251 274 0.96 5 18 2e-05 0.0018 19.2 1.9 1 23 287 310 287 310 0.96 6 18 3e-05 0.0027 18.6 0.9 2 23 337 359 336 359 0.97 7 18 0.00021 0.019 16.0 3.5 2 23 369 391 368 391 0.97 8 18 0.015 1.4 10.2 0.8 2 19 396 413 395 416 0.92 9 18 0.00084 0.076 14.1 0.5 2 21 421 440 421 443 0.95 10 18 0.13 12 7.2 1.9 3 23 453 474 452 474 0.95 11 18 0.002 0.19 12.9 6.1 1 23 479 502 479 502 0.96 12 18 6e-05 0.0055 17.7 3.5 2 23 515 537 514 537 0.97 13 18 0.014 1.3 10.3 1.4 1 23 562 585 562 586 0.94 14 18 0.6 55 5.1 0.1 2 23 592 613 591 613 0.91 15 18 0.018 1.6 9.9 2.1 2 23 617 638 617 638 0.98 16 18 8.9 8.1e+02 1.4 2.6 3 23 646 668 644 668 0.90 17 18 0.013 1.2 10.3 0.2 1 23 704 726 704 726 0.97 18 18 0.16 15 6.9 2.0 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTAAAGGAAGAGAAAGTAAAAATAAAAATTGAAAATGAATATGATCGGAAAGATCCCACATCATTCTTACCAAAAGAAGAGATGTGCTATGAGATTAAAAAAAAGAAAAAGAAAAAAAAAAAAGACAAACAAGAAGATCCCTTCAAGGACATTGAGGAGAAGGCTCAGATCCCTTTAGAGGTAACTATCTATGATGCCACCAAGTTGGATCCAGAAGTCAATATTAAGGTGGAAAATATTGAAGTTGAATTGGATTTCAATGATTTTGCAAATGACAATGGCCTCATGGTAGAGGGTCCTCACAGTGAAGATAGTCAAGAACCATCAGTTAAATTGGAACAGGATAACAAAGAAGCAGTTCTGTTAACATTTGAGAGCATCATCAACGACAATAAATTGTTTGGAATCAGTGATGGAACTATCAATTTGCCTCCGTCGGCGCCAAACTACGTTTGTAAAGTCTGCCACTTAGTTTTTCAATCACCTAAAACATTAAAAATGCACCAGAAACGAAAACACAAAGTATATCGTAGAGCATTCAAGCATATTTGTGATTATTGTGGCATGTCATATGAACAAAAAAATAGCTTAGTTGCTCATATTAAGAGAAAACATGGCCCTAATGCAACACCCGATGACAGGGAAGAACGGACTTGTGAGATATGTGCGCTAGTATTTAAGGGACTTAATAGGTTACGGATGCATATGAGAAGGAAACATGGATCATTTGAAGATTCTTTCAAACATGTGTGCCAGGAATGTGGGCTCACCTATGATAAGTATAGAAGTTTAATAGTCCACATTCAGCGAAAACATACTGTTGATAATAAAAAGAAGGTCTTAGAGCAGTGGTTTAACTGTCCGTTTTGCCCAAAAGTATTTACTAGAAGAGAAACATATTCGAGGCATGTGCAAAGGAAACATCGTATTGATGATGAAGAAAATGAAGATGTGAAACCTGATGTTCTGGAAAACTGCAAAAATGAAGAAACTGGGGAAATTACTTGTAAAGAATGCCCTCTTGTTTTTTCAACTTTAAATTTCTTGAAACTACATATGAGAAGAAAACACAATGCTTTACGAGATGATTTCCGACTCAAATGTAAGATTTGTCATCTGTCGTACAATAAAATCGAGAGTCTTAAAAGGCATATTAGAAGAAAACATGACAAGGGTTCTTATTGCGAGGTTTGTAATAAGCAATTTGATACCAGAGAGCAGTACTTAAATCATTCGCATATGAAAGCGATAAGAGAGTGTACAATTTGTGGGTTGATCTTCGCGTCCAAAGGTGGTTTAGGAAAACACATGAGATGTATGCATAAAGTGGACGAACCGAAAACAGTATTTTGTTCATTGTGTAATGAAGGATTTCATGATAAAAGGCAGCTTAAGCCCCATTACATGAAAGTGCATTTGAAAGTGTCTTATACTTGTCATTTCTGTAAAAAACAATTCAAGGCTAAAGAAAGTTATAGAAGACATATTCTTTACAAGCATCCAATGGATAGTCACCCCAGCAATAGCCAGCTGCAGAAATGTGAACACTGTCCAGAGACTTTTAGGGATGAGTTCGAATTATGCAAGCATATTAATATGTCACACAGTTCCAAAATTCAGTCTGGAGAGCACAATGTTGTCAAAATTGAGAAAGAAGATCAAGATATCAAAGAGAGCTTTCAATGCACTAAATGTCCAGATAATTACATAACTTGGGAGCAGCTACGGCTTCACTACGAGCAAAATCACCACATGACTGAAGATACACAGTGTCAGATTTGTGGCGAAATAATGCCCGCCAACGAATTACAGAAACATATTAAAAATACGCATGCATTAGCTAAATGCAGATACTGTGAATTCCAAACATCTAATCGTGCGAGTATGACTCAACACATGCTGAGGCATAAAAATGCGACGACCTTACATTGCGAATTTACTGGATGCAAATACAAAACGTTTTATGAAGTTGCCATGGAAAAGCATAAACGTAAACATAGAGACATCGGAGTGAAACTTCAGTGCTCGCAGTGTCCTTTCCAGTCTATGAATAAGTACATTCTGAGATATCATGAAGAAGCTCACACGACCGGGAAGAAGAGGTACTCGTGTGACCAGTGCGATTATGCGACGATCTTGCCGGCGAATTTAGTACAACACAAATATAAGCATTCTACAGAAAAGAGGTTTAAATGCGAAGTGTGTCCCTTTGCTACAAAATACAATACCTCATTGCGCTTTCACGTCAAGAAAAAACATTGTGATCTCCCTACTTTCAGTTAA
- Protein Sequence
- MSVKEEKVKIKIENEYDRKDPTSFLPKEEMCYEIKKKKKKKKKDKQEDPFKDIEEKAQIPLEVTIYDATKLDPEVNIKVENIEVELDFNDFANDNGLMVEGPHSEDSQEPSVKLEQDNKEAVLLTFESIINDNKLFGISDGTINLPPSAPNYVCKVCHLVFQSPKTLKMHQKRKHKVYRRAFKHICDYCGMSYEQKNSLVAHIKRKHGPNATPDDREERTCEICALVFKGLNRLRMHMRRKHGSFEDSFKHVCQECGLTYDKYRSLIVHIQRKHTVDNKKKVLEQWFNCPFCPKVFTRRETYSRHVQRKHRIDDEENEDVKPDVLENCKNEETGEITCKECPLVFSTLNFLKLHMRRKHNALRDDFRLKCKICHLSYNKIESLKRHIRRKHDKGSYCEVCNKQFDTREQYLNHSHMKAIRECTICGLIFASKGGLGKHMRCMHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCKKQFKAKESYRRHILYKHPMDSHPSNSQLQKCEHCPETFRDEFELCKHINMSHSSKIQSGEHNVVKIEKEDQDIKESFQCTKCPDNYITWEQLRLHYEQNHHMTEDTQCQICGEIMPANELQKHIKNTHALAKCRYCEFQTSNRASMTQHMLRHKNATTLHCEFTGCKYKTFYEVAMEKHKRKHRDIGVKLQCSQCPFQSMNKYILRYHEEAHTTGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00167089;
- 80% Identity
- iTF_00970611;