Tact023163.1
Basic Information
- Insect
- Thymelicus acteon
- Gene Symbol
- -
- Assembly
- GCA_951805285.1
- Location
- OX638230.1:8916025-8918577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.019 16.3 3.1 1 23 154 177 154 177 0.98 2 17 4.3e-05 0.0041 18.4 1.0 1 23 186 209 186 209 0.96 3 17 0.019 1.8 10.1 0.9 2 23 222 244 222 244 0.97 4 17 0.0028 0.26 12.7 1.1 1 23 253 276 253 276 0.96 5 17 2.4e-05 0.0022 19.2 1.9 1 23 289 312 289 312 0.96 6 17 3.7e-05 0.0035 18.6 0.9 2 23 338 360 337 360 0.97 7 17 0.00025 0.024 16.0 3.5 2 23 370 392 369 392 0.97 8 17 0.017 1.6 10.2 0.7 2 19 397 414 396 417 0.93 9 17 0.00097 0.091 14.2 0.6 2 21 422 441 421 444 0.95 10 17 0.16 15 7.2 1.9 3 23 454 475 453 475 0.95 11 17 0.0025 0.23 12.9 6.1 1 23 480 503 480 503 0.96 12 17 7.5e-05 0.0071 17.6 3.5 2 23 516 538 515 538 0.97 13 17 0.029 2.8 9.5 1.6 1 23 563 586 563 587 0.94 14 17 0.73 69 5.1 0.1 2 23 593 614 592 614 0.91 15 17 0.011 1 10.8 1.5 2 23 618 639 617 639 0.97 16 17 0.016 1.5 10.3 0.2 1 23 705 727 705 727 0.97 17 17 0.2 19 6.9 2.0 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGTCTATTAAAGAAGAGAAAGTCAAagtaaaaattgaaaatgatacTGATCGCAAAGATCCCACATCATTCTTGCCAGAAGAAGAAATGAGCtatgagataaaaaaaaagaaaaagaagaagaagaagaaaaaagacAAACAGGAAGATCCTTTCAAGGACATTGAAGAGAAGGCTCAGATTCCTTTAGCAGTGACTATTTATGATGCCACTAAGTTGGATCCAGAAGTTAATATTAAGGTGGAAAATATAGAAGTTGAATTGGATTTTAATGATtttGCAAACGACAATGGATTAATGGTAGAGGGCCCTCAAAGTGAAGACAGCCAAGAACCAGCAGTTAAATTGGAACAGGATAACAAAGAAGCAGTTCTGTTGACATTTGAGAGCATCATCcatgaaaataaattgtttggAATCAGTGATGGAAGTTTAGGCTTACCCCAGTCAGCACCGAACTATGTTTGTAAGGTTTGCCATCTTGTTTTTCAATCACCGAAAACACTAAAAATGCATCAGAAACGAAAACACAAAGTGTATCGTAGGGCATTCAAACATATTTGTGATTATTGTGGCATGTCATACGAACAAAAGAATAGCTTAGTAGCAcatattaaaagaaaacatGGTCCTAATGCGACTCCTGATGACAGGGAAGAGCGGACTTGTGAGATATGTGCATTAGTTTTTAAGGGATTTAATCGGTTGCGGATGCATATGAGGAGAAAACATGGATCGTTTGAGGACTCCTTTAAACATGTATGTCAGGAATGTGGGCTCACCTATGATAAATATAGAAGTTTAATAGTTCATGTCCAACGTAAGCATACTgttgataaaaataaacaggTTTTGGACCAATGGTTTAATTGCCCATTCTGCCCGAAAGTATTCACTAGAAGAGAAACATATTCGAGGCATGTGCAAAGGAAACATCGAATTGATGAAGAAAATGAAGATGTGAAACCTGATCTTTTAGAAAACTGTAAGAATGAAGAAACTGGAGAAATTACTTGTAAAGAATGTCCTCTTGTTTTCTCTACTCTTAATTTTCTGAAACTACATATGAGAAGAAAACACAATGCTTTACGAGAGGATTTCAGACTCAAATGCAAGATTTGTCATCTCTCATACAATAAAATCGAGAGTCTCAAAAGGCATATTAGAAGGAAACACGACAAAGGTTCTTATTGCGAAGTATGTAATAAGCAATTTGATACCAGGGAGCAGTACTTAAATCATTCGCACATTAAAGCTATTAAAGAATGTACAATTTGTGGGCTAATTTTCGCGTCCAAAGGTGGTTTGGGAAAACACATGCGATGTATGCATAAAGTAGACGAACCGAAGACGGTGTTTTGTTCCTTATGCAATGAAGGATTTCATGATAAAAGACAACTAAAGCCTCATTACATGAAAGTGCATTTGAAAGTGTCCTATACTTGTCATTTCTGTAAAAAGCAATTCAAAGCGAAAGAGAGTTACAGAAGACATATTCTCTACAAGCATCCAATGGATAATGATGCTAATAATAGCCAGCTTCAGAAATGTGATCACTGTCCAGAGACCTTCAGAGATGAATTCGAATTGTGCAAGCATATTAATATGTCGCATAGTGCCGAAATTCAAGCTGGAGATCATAATGATGTCAAAATAGAGAAAGAAGATCCAGATATTAAAGACTGCTTTCAATGCACAAAATGTCCAGAAAACTACTTAACTTGGGAGCAGTTACGGCTCCACTACGAGCAAAATCACCATTTGACAGAAGACACCCAGTGTCAAATCTGCGGAGAAATAATGCCGGCGAATGAATTGCAGaaacacattaaaaatacgcaTGCAATAGTAAAATGTAGATATTGCGAATTTCAAACTTCTAATCGTGCGAGTATGACTCAACACATGCTGAGGCATAAAAACGCGACAACCTTGCATTGCGAATTTACTGGATGCAAATACAAAACGTTTTACGAAGTCGCAATGGAAAAGCATAAGCGTAAACATAGAGACATTGGAGTAAAGCTTCAATGTACGCAGTGTCCTTTCCAGTCTATGAATAAGTATATTCTGCGATATCATGAAGAAGCTCATATGACTGGAAAAAAAAGGTACTCGTGCGACCAGTGCGATTATGCGACTATCTTGCCCGCGAATCTAGTACAACACAAATACAAGCATTCTACAGAAAAGAGGTTTAAATGCGAAGTGTGCCCCTTTGCTACAAAATACAACACCTCATTGCGCTTCCACGTCAAGAAAAAACATTGTGATCTCCCTACTTTCAGTTAa
- Protein Sequence
- MSIKEEKVKVKIENDTDRKDPTSFLPEEEMSYEIKKKKKKKKKKKDKQEDPFKDIEEKAQIPLAVTIYDATKLDPEVNIKVENIEVELDFNDFANDNGLMVEGPQSEDSQEPAVKLEQDNKEAVLLTFESIIHENKLFGISDGSLGLPQSAPNYVCKVCHLVFQSPKTLKMHQKRKHKVYRRAFKHICDYCGMSYEQKNSLVAHIKRKHGPNATPDDREERTCEICALVFKGFNRLRMHMRRKHGSFEDSFKHVCQECGLTYDKYRSLIVHVQRKHTVDKNKQVLDQWFNCPFCPKVFTRRETYSRHVQRKHRIDEENEDVKPDLLENCKNEETGEITCKECPLVFSTLNFLKLHMRRKHNALREDFRLKCKICHLSYNKIESLKRHIRRKHDKGSYCEVCNKQFDTREQYLNHSHIKAIKECTICGLIFASKGGLGKHMRCMHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCKKQFKAKESYRRHILYKHPMDNDANNSQLQKCDHCPETFRDEFELCKHINMSHSAEIQAGDHNDVKIEKEDPDIKDCFQCTKCPENYLTWEQLRLHYEQNHHLTEDTQCQICGEIMPANELQKHIKNTHAIVKCRYCEFQTSNRASMTQHMLRHKNATTLHCEFTGCKYKTFYEVAMEKHKRKHRDIGVKLQCTQCPFQSMNKYILRYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00167089;
- 80% Identity
- -