Tlin022407.1
Basic Information
- Insect
- Thymelicus lineola
- Gene Symbol
- -
- Assembly
- GCA_963932265.1
- Location
- OZ010698.1:7495813-7498323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00021 0.02 16.3 3.1 1 23 152 175 152 175 0.98 2 17 4.4e-05 0.0042 18.4 1.0 1 23 184 207 184 207 0.96 3 17 0.0089 0.84 11.1 0.6 2 23 220 242 220 242 0.97 4 17 0.0028 0.27 12.7 1.1 1 23 251 274 251 274 0.96 5 17 2.4e-05 0.0023 19.2 1.9 1 23 287 310 287 310 0.96 6 17 3.7e-05 0.0035 18.6 0.9 2 23 336 358 335 358 0.97 7 17 0.00026 0.024 16.0 3.5 2 23 368 390 367 390 0.97 8 17 0.018 1.7 10.2 0.7 2 19 395 412 394 415 0.93 9 17 0.00098 0.093 14.2 0.6 2 21 420 439 419 442 0.95 10 17 0.16 15 7.2 1.9 3 23 452 473 451 473 0.95 11 17 0.0025 0.24 12.9 6.1 1 23 478 501 478 501 0.96 12 17 0.00016 0.015 16.6 3.3 2 23 514 536 513 536 0.95 13 17 0.03 2.8 9.5 1.6 1 23 561 584 561 585 0.94 14 17 0.75 70 5.1 0.1 2 23 591 612 590 612 0.91 15 17 0.011 1.1 10.8 1.5 2 23 616 637 615 637 0.97 16 17 0.016 1.5 10.3 0.2 1 23 703 725 703 725 0.97 17 17 0.2 19 6.9 2.0 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTTAAAGAAGAGAAAGTCAAAGTAAAAATTGAAAATGATACTGATCGGAAAGATCCTACATCATTCTTGCCAGAAGAAGAAATGAgctatgaaattaaaaaaaagaaaaagaagaaaaaaaaagacaAACAGGAAGATCCTTTCAAAGACATTGAAGAGAAGGCTCAGATCCCTGTAGCAGTGACTATTTATGATGCTACCAAGTTGGATCCAGAAGTTAATATTAAGGTGGAAAATATAGAAGTTGAATTGGATTTTAATGATTTTGCAAACGACAATGGACTAATGGTAGAGGGCCCTCAGAGTGAAGACAGCCAAGAACCAGCAGTTAAATTAGAACAGGATAATAAAGAAGCAGTTTTGTTGACATTTGAGAGCATCATCCAGGAAAATAAATTGTTTGGAATAAGTGATGGAAGTTTAAGCTTACCTCAGTCAGCACCAAACTATGTTTGTAAGGTCTGCCACCTCGTTTTTCAATCACCGAAAACATTAAAAATGCATCAGAAACGAAAACACAAAGTATATCGTAGGGCATTCAAGCATATTTGTGATTATTGTGGCATGTCATACGAACAAAAGAATAGCTTAGTCGCAcatattaaaagaaaacatGGTCCTAATGCGACCCCCGATGACAGGGAAGAACGGACTTGTGAAATATGTGCATTAGTTTTTAAGGGACTTAATCGTTTACGGATGCATATGAGAAGAAAACATGGGTCCTTTGAGGACTCCTTTAAACATGTATGTCAGGAATGTGGGCTCACTTATGACAAATATAGAAGTTTAATAGTTCATGTCCAACGTAAGCATACTgttgataaaaataaacagGCCATGGACCAGTGGTTTAATTGCCCATTCTGCCCGAAAGTATTCACCAGAAGAGAAACATATTCGAGGCATGTGCAAAGAAAACATCGAATCGATGAAGAAAATGAAGATGTGAAACCTGATCttttagaaaactgtaaaaacgAGGAAACTGGAGAAATTACTTGTAAAGAATGCCCTCTTGTTTTCTCTACTCTTAATTTTCTGAAACTTCATATGAGAAGAAAACACAATGCTCTACGAGAAGATTTCCGACTCAAATGCAAGATTTGTCATCTCTCTTACAATAAAATCGAGAGTCTCAAAAGGCATATTAGAAGAAAACACGACAAAGGTTCTTATTGCGAAGTTTGTAATAAGCAATTTGATACCAGGGAGCAGTACTTAAATCATTCGCATGTTAAAGCTATTAAAGAATGTACAATTTGTGGGCTAATTTTCGCGTCCAAAGGTGGCTTGGGAAAACACATGCGATGTATGCATAAAGTAGATGAACCGAAGACAGTATTTTGTTCCTTATGCAATGAAGGATTTCATGATAAAAGACAGCTAAAGCCTCATTACATGAAAGTGCATTTAAAAGTGTCTTATACTTGTCATTTTTGTAAAAAGCAATTCAAAGCGAAAGAGAGTTACAGAAGACATATTCTTTACAAGCATCCAATGGATAGTGATGCTAATAATAGCCAGCTTCAGAAATGTGAGCATTGTCCAGAGACATTCAGAGATGAATTCGAACTGTGCAAGCATATTAATTTGTCGCATAGTGCCGAAATTCAAGCTGGAGATCAAAATGCTGTCAAAATAGAGAAAGAAGATCCAGATATTAAAGAGTGCTTTCAGTGCACAAAATGTCCAGAAAACTACTTAACTTGGGAGCAGTTACGGCTCCACTATGAGCAAAATCATCACTTGACAGAAGACACCCAGTGTCAAATTTGCGGAGAAATAATGCCGGCGAATGAATTGCagaaacatattaaaaatacgCATGCAATAGTAAAATGTAGATATTGCGAATTTCAAACTTCTAATCGTGCGAGTATGACTCAACACATGCTGAGGCATAAAAACGCGACGACCTTACACTGCGAATTTACTGGATGCAAATACAAAACGTTTTACGAAGTCGCAATGGAAAAGCATAAGCGTAAACATAGAGACATTGGAGTAAAGCTTCAATGCACACAGTGTCCTTTCCAGTCTATGAATAAGTATATTCTGCGATATCATGAAGAAGCTCATATGACTGGGAAAAAAAGGTACTCGTGCGACCAGTGCGATTATGCGACTATCTTGCCCGCGAATCTAGTACAACACAAATACAAGCATTCTACAGAAAAGAGGTTCAAATGCGAAGTGTGCCCCTTTGCTACAAAATACAATACGTCATTGCGCTTCCACGTCAAGAAGAAACATTGTGATCTCCCTACTTTCAGTTAA
- Protein Sequence
- MSVKEEKVKVKIENDTDRKDPTSFLPEEEMSYEIKKKKKKKKKDKQEDPFKDIEEKAQIPVAVTIYDATKLDPEVNIKVENIEVELDFNDFANDNGLMVEGPQSEDSQEPAVKLEQDNKEAVLLTFESIIQENKLFGISDGSLSLPQSAPNYVCKVCHLVFQSPKTLKMHQKRKHKVYRRAFKHICDYCGMSYEQKNSLVAHIKRKHGPNATPDDREERTCEICALVFKGLNRLRMHMRRKHGSFEDSFKHVCQECGLTYDKYRSLIVHVQRKHTVDKNKQAMDQWFNCPFCPKVFTRRETYSRHVQRKHRIDEENEDVKPDLLENCKNEETGEITCKECPLVFSTLNFLKLHMRRKHNALREDFRLKCKICHLSYNKIESLKRHIRRKHDKGSYCEVCNKQFDTREQYLNHSHVKAIKECTICGLIFASKGGLGKHMRCMHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCKKQFKAKESYRRHILYKHPMDSDANNSQLQKCEHCPETFRDEFELCKHINLSHSAEIQAGDQNAVKIEKEDPDIKECFQCTKCPENYLTWEQLRLHYEQNHHLTEDTQCQICGEIMPANELQKHIKNTHAIVKCRYCEFQTSNRASMTQHMLRHKNATTLHCEFTGCKYKTFYEVAMEKHKRKHRDIGVKLQCTQCPFQSMNKYILRYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00167089;
- 80% Identity
- -