Abis025068.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- JAEMGE010000029.1:2552395-2554224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5e-07 4.2e-05 24.4 4.9 1 23 109 131 109 131 0.98 2 11 0.038 3.2 9.0 4.2 2 23 227 249 225 249 0.89 3 11 0.00011 0.0092 17.0 1.2 1 23 253 275 253 275 0.98 4 11 0.0002 0.017 16.2 0.6 2 23 297 319 296 319 0.93 5 11 0.066 5.5 8.3 1.3 1 23 323 346 323 346 0.97 6 11 0.013 1.1 10.5 0.2 2 23 369 391 368 391 0.91 7 11 1.6e-05 0.0013 19.7 3.0 1 23 401 423 401 424 0.96 8 11 0.0026 0.22 12.7 1.2 2 23 440 461 439 461 0.96 9 11 0.0071 0.6 11.3 0.4 1 23 467 489 467 489 0.94 10 11 0.32 27 6.1 3.1 1 22 495 516 495 519 0.90 11 11 0.0093 0.79 11.0 0.3 2 23 571 592 570 592 0.97
Sequence Information
- Coding Sequence
- ATGGATATAACAGTCACTGAAACACATTTAATATCAAACAAAGTGATCAATACCACATCAACTATTACAAACCCTCAAGATGGACTGGTGCAGTCACAAACAACTAAGACTTTAGTCATGGAAATTCATCCAATGGGCGGAGTGAATATGTCATTGGGCAGGATGGGAAACCCTGAAGAAATATTGCCTACATTCAACTCTGAATATGACCAAGCTTCAGAGTATGATGAGTCTTTCCAACTCAATTCAATAACAGGAAATGTACTATCTTTAGAGCAAGAAGCATATGGCCTTCTTAAAGCAGATCACTGCACAGAAAAACGATACAATTGCCACAAATGTGACAAGTCCTTCAAGAAATCCAGCTATTTAAAAGGTCATATGAGAGTGCATACTTCTATAGAAAATCGTGCGATGGGTCTGATCAAAGGCTTAAAAACGCGAATGGcaaatatgaagaaaaaaatatgcaaagatATCAAAGAAGAGGTAAAAAGTATAGGTAATACTTTCAAAAGTAACTCTCGACTCGAGAGATTGGAAAATCGTACTCGTGTTAGGGAAGAAGTGAAAAAAGAAGGCTACGAATGCACTTGCGGCGAAGTTTATAAGCGAAAAATAAGAATGTTGAGCTGTCTAAGGTCACACGATGAATATAAAGACACAGATTCTTGTTTTTCTTGCATTTCTTGCACCAAGCAATTCAAAGACAAAAATGAGTTAACATTACACAGAAAGCGACTCCATAGAAAACGGTTTCCCTGTAAATTTTGTCCTACAGATTACAGTACAAGAAAGGAACTATTCAAGCATCTTCAAATACACCAGAAAGTGCAACTAATGGAGTACAAAGTTATATCTGAAGTGGTGAAAGGGAAGCAGGAGCTAAAATGTTTTATGTGCTCGAAAAGCTTTTCAGAACTGTCCGAATTGAAATCTCATGTCATGGACGACCATAAAGAGCCCTACATTTGTCCACATTGCAATGGGAAATTCGTAAAAATCATTGATTTTGGCAATCATACAAAGACGTACCACCCCGAAGTCGAAGGTCAATCTGTTTTAGATGTGCTCGAAGCGTTCTCAAAATTGGTTCAGGCTTGGAAGTGTGAGGAGTGCAATCTACAGTTTAACGAAGCGGATAAGTTTGCGAAACACCAAGTCGAAAATCATAGTCCAGATTTAAAAGCGAAAGAACAGTTCCAGTGTACTGATTGTAGACGAGTTTTTATAAGTCAAAAAGGATTGACATCCCACAAACGGATACATCACAGCACTGGCAGTACGGAAGAAACTGAGTCGGTAGAAAAGGGTGTGATGTGTGTCGAGTGCAGGAAGATATGTAAGGATATGAACGCCTTAACTTCACATATGCGTCTACATTCACTGGACCGAAAGTACCCTTGCAAGTTCTGTGACTTTAGATTCGCAACACCAGAAAAAAGAAAAGCCCACGCAGAACTACACACTGGAGATAtgaaatatgtttgttttatatgtgaATATCAGTGCAGTTCGGAGAACAGATTGAAGCAACATAAAATGTCCTTGAAGCATTTGAACATGAAAGAGTTTTTACTAACCGGGAAGCCATTGATTGAAGAGCAATCGACGTCTAAAAAAAGTGATAGAAAAAGTGATAAAAAAAGTGATGAAAAAGAGAAGAAAAGGAAACATAGTAGTTCTTCATCAGGCGATGAGAGGGAATCAACTTGTGACGTATGCGGTGATAAGTTCCCGAGTGAAGAGGATATGTtgaaacacaaacaaacacacccTTTCATAGAATTCCCCAATGAAGACACACCTACTAGAATATTCTTTAAGTAA
- Protein Sequence
- MDITVTETHLISNKVINTTSTITNPQDGLVQSQTTKTLVMEIHPMGGVNMSLGRMGNPEEILPTFNSEYDQASEYDESFQLNSITGNVLSLEQEAYGLLKADHCTEKRYNCHKCDKSFKKSSYLKGHMRVHTSIENRAMGLIKGLKTRMANMKKKICKDIKEEVKSIGNTFKSNSRLERLENRTRVREEVKKEGYECTCGEVYKRKIRMLSCLRSHDEYKDTDSCFSCISCTKQFKDKNELTLHRKRLHRKRFPCKFCPTDYSTRKELFKHLQIHQKVQLMEYKVISEVVKGKQELKCFMCSKSFSELSELKSHVMDDHKEPYICPHCNGKFVKIIDFGNHTKTYHPEVEGQSVLDVLEAFSKLVQAWKCEECNLQFNEADKFAKHQVENHSPDLKAKEQFQCTDCRRVFISQKGLTSHKRIHHSTGSTEETESVEKGVMCVECRKICKDMNALTSHMRLHSLDRKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCSSENRLKQHKMSLKHLNMKEFLLTGKPLIEEQSTSKKSDRKSDKKSDEKEKKRKHSSSSSGDERESTCDVCGDKFPSEEDMLKHKQTHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457514;
- 90% Identity
- iTF_00212899; iTF_00723448; iTF_00213893;
- 80% Identity
- -