Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993157.1:6406210-6409745[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3e-06 0.0004 21.3 2.1 1 23 260 282 260 282 0.98

2 11 0.062 5.8 8.2 3.3 2 23 376 398 374 398 0.89

3 11 0.00017 0.016 16.3 1.1 1 23 402 424 402 424 0.98

4 11 0.00023 0.021 15.9 0.6 2 23 446 468 445 468 0.93

5 11 0.093 8.7 7.7 1.3 1 23 472 495 472 495 0.97

6 11 0.015 1.4 10.2 0.2 2 23 518 540 517 540 0.91

7 11 1.8e-05 0.0017 19.3 3.0 1 23 550 572 550 573 0.96

8 11 0.0029 0.27 12.4 1.2 2 23 589 610 588 610 0.96

9 11 0.0081 0.76 11.0 0.4 1 23 616 638 616 638 0.94

10 11 0.37 34 5.8 3.1 1 22 644 665 644 668 0.90

11 11 0.086 8 7.8 0.1 3 23 721 741 720 741 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3e-06	0.0004	21.3	2.1	1	23	260	282	260	282	0.98
2	11	0.062	5.8	8.2	3.3	2	23	376	398	374	398	0.89
3	11	0.00017	0.016	16.3	1.1	1	23	402	424	402	424	0.98
4	11	0.00023	0.021	15.9	0.6	2	23	446	468	445	468	0.93
5	11	0.093	8.7	7.7	1.3	1	23	472	495	472	495	0.97
6	11	0.015	1.4	10.2	0.2	2	23	518	540	517	540	0.91
7	11	1.8e-05	0.0017	19.3	3.0	1	23	550	572	550	573	0.96
8	11	0.0029	0.27	12.4	1.2	2	23	589	610	588	610	0.96
9	11	0.0081	0.76	11.0	0.4	1	23	616	638	616	638	0.94
10	11	0.37	34	5.8	3.1	1	22	644	665	644	668	0.90
11	11	0.086	8	7.8	0.1	3	23	721	741	720	741	0.98

Sequence Information

Coding Sequence: ATGTCATCACAAAATTCTGAACACCAAATAATAGATTCAATGAGTGTAATTGACAATATGCAAATTAAAGAAGAGGAAACTAATGAGTTAATATTAGATATTAAACCAGAAACAGAATATATTGATAATGGAAATCCATTTGAAAACATTCAATTAGAAGTTAAAGAGGAATTTATTACACCAAACTGCGAAGGTGATAAAGAAAATATGTCTGTACCTGTTCATGAGGCTGAAAATTTTATAGAAACAGAAATAACTGATACAAATTTAGATGATAGTGTAAAAATGGAAATGCCATATGAATACCCAAGTATTGAGGATGGTAGTATGGACAGTGAGGAAGCCACTGCTCTCAATAATGTGGAAGCCTGTTTACAAGATGAGTTTAATATAAAACATGAAATGGATGAGGAGCAGCCCAAAGAGAATATTGATAAAATAATCAAAGAAGAAATGGAAATTACAGTCACCGAAACACATTTAATAACAAACAAAGTGATCAATACCACATCAACTATAACAAATCCGCAAGATGGACTGGCGCAGTCACAAACAACTAAAACTTTAGTCATGGAAATTCACCCAATGGGTGGACTTAATGCATCGTTAGACAGTATGGGAAACCCTGAAGAAATATTGCCTACATTCAACACTCACTTTGACCAAGCTTCAGAGTATGATGACTCTTTCCAACTTAATTCAATAACAGGGAATGTACTATCTCTAGAACAAGAAGCGTATGGCCTTCTTAAAGCAGATCATTGCACAGAAAAAAGATACAATTGCCCCAAATGTGACAAGTCTTTCAAGAAATTTAGCTATTTGAAACCTCATATGAGAGTGCACACTTCTATCGAAAACCGTGCAATGGGTTTTATCAAAGGCTTGAAGACACGAATGGAAAATATGAAGAAAAAAATATGCGAAGATACCAAAGAAGAAAAAAAAAGTGACAAATCCAAAAGCAAATCACGACTGGAGAGATTAGAAAATAGAACTCGTGTTAAAGAAGATGTGAAAAAAGAAGGCTATGAATGTACTTGCGGTGAAATTTATAAGCGAAAAATAAGAATGTTGGGCTGTTTGAGGTCACATGATGAATATAAGGACGCAGATTCTTGCTTTTCTTGTATTTCTTGCACCAAACAGTTCAAAGACAAAAATGAGTTAGCATTACACAGAAAACGACTACATAGAAAGCGGTTTCCCTGTAAATTTTGTCCTACAGATTACAGTTCACGGAAGGAACTATTCAAGCATCTCCAAATACATCAGAAAGTGCAGCTAATGGAGTACAAAGTCATATCAGAAGTGGTGAAAGGGAAGCAGGAACTAAAATGTTTTATGTGCTCGAAAAGCTTTTCAGAACTGTCCGAGTTGAAATCTCACGTAATGGATGACCACAAAGAGCCGTATATTTGTCCGCATTGCAATGGGAAATTCATAAAAATTATCGATTTTGGCAATCATACAAAGACGTACCATCCCGAAGTCGAAGGTCAATCTGTTTTAGATGTGCTCGAAGCATTCTCCAAATTGGTTCAGGCCTGGAAATGTGAGGAGTGCAATCTACAGTTTAACGAAGCGGATAAGTTTGCGAAACACCAAGTAGAGAACCACAGTCCAGATTTGCAAGCAAAAGAACAATTCCAGTGTACTGATTGTAGACGAGTTTTTATAAGTCAGAAAGGATTGACGTCTCATAAACGTATACATCACAACACTGGCAGCACAGAAGAAACGGAGTCGGTAGAAAAGGGTGTCATGTGTGTGGAGTGCAGGAAGATTTGTAAGGATATGAACGCCTTAACCTCACATATGCGTCTACATTCATTAGATCGAAAGTACCCTTGTAAATTCTGTGACTTCAGATTCGCAACCCCAGAAAAGAGAAAGGCTCATGCAGAACTACATACTGGAGATATGAAATATGTTTGTTTTATTTGTGAATATCAATGCAGTTCAGAGAACAGATTGAAGCAACACAAAATGTCTTTAAAACATGTAAATATGAAAGAGTTTTTACTAACAGGGAAACCATTAATTGAGGAACAGTCGACGTCTAAAAAAAGTGATAGAAAAAGTGATAAAAAAGGTGATGAAAAGGAGAAGAAAAGGAAACATAGCAGTTCTTCATCAGGTGATGATATTGAATCAGCTTGTGATGTATGCGGTGATAAGTTCCCGAGTGAGAAGGACATGTTGGAACACAAACAAACACACCCTTTCATTGAATTCCCCAATGAAGACACACCTACTAGAATATTCTTTAAGTAA
Protein Sequence: MSSQNSEHQIIDSMSVIDNMQIKEEETNELILDIKPETEYIDNGNPFENIQLEVKEEFITPNCEGDKENMSVPVHEAENFIETEITDTNLDDSVKMEMPYEYPSIEDGSMDSEEATALNNVEACLQDEFNIKHEMDEEQPKENIDKIIKEEMEITVTETHLITNKVINTTSTITNPQDGLAQSQTTKTLVMEIHPMGGLNASLDSMGNPEEILPTFNTHFDQASEYDDSFQLNSITGNVLSLEQEAYGLLKADHCTEKRYNCPKCDKSFKKFSYLKPHMRVHTSIENRAMGFIKGLKTRMENMKKKICEDTKEEKKSDKSKSKSRLERLENRTRVKEDVKKEGYECTCGEIYKRKIRMLGCLRSHDEYKDADSCFSCISCTKQFKDKNELALHRKRLHRKRFPCKFCPTDYSSRKELFKHLQIHQKVQLMEYKVISEVVKGKQELKCFMCSKSFSELSELKSHVMDDHKEPYICPHCNGKFIKIIDFGNHTKTYHPEVEGQSVLDVLEAFSKLVQAWKCEECNLQFNEADKFAKHQVENHSPDLQAKEQFQCTDCRRVFISQKGLTSHKRIHHNTGSTEETESVEKGVMCVECRKICKDMNALTSHMRLHSLDRKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCSSENRLKQHKMSLKHVNMKEFLLTGKPLIEEQSTSKKSDRKSDKKGDEKEKKRKHSSSSSGDDIESACDVCGDKFPSEKDMLEHKQTHPFIEFPNEDTPTRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00457514;
90% Identity: iTF_00160139;
80% Identity: -