Apag007372.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:19755047-19759036[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 8.8 7.0 0.9 1 20 63 82 63 84 0.93 2 13 0.00018 0.013 15.8 0.7 1 23 160 183 160 183 0.90 3 13 0.0084 0.63 10.6 1.2 3 23 191 212 189 212 0.93 4 13 5.6e-05 0.0042 17.4 2.4 1 20 218 237 218 238 0.96 5 13 2.1e-08 1.6e-06 28.2 0.9 1 23 250 272 250 272 0.98 6 13 0.00076 0.057 13.9 0.4 2 23 283 304 283 304 0.97 7 13 0.011 0.84 10.2 0.9 2 23 311 332 310 332 0.96 8 13 1.3e-05 0.00096 19.5 4.6 1 23 338 360 338 360 0.99 9 13 1.2e-05 0.0009 19.5 2.1 1 23 366 388 366 388 0.94 10 13 2.2e-06 0.00017 21.8 1.1 1 23 394 417 394 417 0.95 11 13 7.7e-06 0.00058 20.1 0.3 1 23 423 445 423 445 0.91 12 13 1.3e-06 0.0001 22.5 1.9 1 23 451 473 451 473 0.98 13 13 3.2e-07 2.4e-05 24.5 2.1 2 23 480 502 479 502 0.97
Sequence Information
- Coding Sequence
- ATGTCTCATAGAATAGAAGTCGTCAAAATCGAGGAAGCACTTCCGATAAAGGAAGACAGTTCTAGTATATTATTCGGCGACTCACCAAACGAAAATGTTCTGCAGGCTGCAGAGGATCAGGAGGAGACAGTTTTCAATGGAGAAAcgaTTCCACAGAACACGCAAGTTATTGAAATCGCAACTGATTACGAATGTGTGACTTGTCACCGTATTTTTACATGCGAGGATATGTTGAAAGATCACCTTGATGTATGCCGAGACGAAGAAGATCGCGCGGACGCTTTAGAAATTGGGCAAATTCCTGGTTATGATTCAGACGATGAAGAATATATGGACGATCCTGATGTAAAGAATGTGTGTCCAACTGATTCTCAGGCTTCAAAGAACAATAATGACTCCGCTTTGATCAAACCAGTATCTGCGGACAAATGTCATTGCTGCGCCGAAGATTTGCTTACCGCTCATAGCGGAGGCCCATACAAGTGCCTGAGTtgtgatttttcattcaaaaaagCATCATCACTCGAGAGGCACAGTGTTGTCGTTCATTGGACAGGAGAATCTCTTGCATGTAAGGTTTGCGGTGCTGCCTGTGCCAACAAAAAGAGTTTGGATAAACATCACTATATAGTCCATGCCAAGCACCAAGTTTTCAAATGCGAACGATGTGATAAATACTTTTCTCGGAAATATCATTTGGACCGACATGTAGTGCAAACAGGATGTGACGGAAAATCGCGTGCCAGTTACGCCTGTCAAGTGTGTAACAAAGTGTTCACGCGAAAGGATAACTTGCGAGAACACTTGCGTATGCATGCAGGAGCACCACAAAGGCAGAAAAAGGCTGTTTGTTCTCAGTGTTCAAAAGAATTTTATACTGTTCAACAATTAGTAATTCATGAACGTACGCACACTGGAGAGCGACCTATATCATGTGATCTATGCAAGAAGACTTTCTTATCAACACCTGCCATGAAGAAGCATCGGCGTGTTCACACTGGCGAAAAACCATTCCAGTGTAAATTTTGCGATAAAAGATTTGCGGCTCGAGAGACATTGAATCGTCATCATCGGACGCATACTGGAGACAAACCGCACGTTTGCCAATATTGTGGCAAGACCTTTATACAAGCTGTCCAATTACGGGCTCATGTTTTTCATCATACTGGAGAATTCGCATTCTACTGTGAAGTTTGCGGAAAGGCATTCAATCGGAAAACCAGACTTACTGTTCATATGAAATTTGTTCACGAAGGAGCCACGCCTTTCCAATGCGAAGTGTGTGAAAAATCTTTTATACGCAAAGAGGACTTGGCAAGACATTCTGTGCTTCACACTGGAATAAAACCGCATAAGTGTGCAAAATGTTCGAAAACATTTGCAGTCAAATCAGCTCTTCGTGTACACATGAACACACATCGGCGAGAGTTACCACAATCTTGCGACGAATGTGGGCGCGCTTTCATAAGACAAGATTGTCTCATGAGACACATGAGAACTAAGCATCGAGATATGCTCGAAGATGCGATGGCAGAAGCTGAAAAGCGTCGACTCCAAAAACAATTGTTCAATATAGCTTCAACTGCCGCTGCAAAATCCAGAACTGAGGGATCCCCTGTTACAATACTATCGCAAGACAAGTTACTAAAGACTATTGTAGAACTGTTGACCCTCCTTGTTGAAGAAGACACGTTGCAGGTATTTGGTTGGCCTGAAGCACCGATTCAGGACGTATTGGAAGCTGTAATAAGGCGCTGTGGACATCAGCCAGTCTCCTCAGACAGCGATTTATTATTTGCTCAGCGACTCAgagaaaatgttaaaatttTGTTTACCGTCGTGATTGAAGATGAAACGGTGAAGTCATTATTGACTACCCAAACTGTAGACGAGGTAATCTTGCATGTTTTAAAGTTAGCcaaagataaataa
- Protein Sequence
- MSHRIEVVKIEEALPIKEDSSSILFGDSPNENVLQAAEDQEETVFNGETIPQNTQVIEIATDYECVTCHRIFTCEDMLKDHLDVCRDEEDRADALEIGQIPGYDSDDEEYMDDPDVKNVCPTDSQASKNNNDSALIKPVSADKCHCCAEDLLTAHSGGPYKCLSCDFSFKKASSLERHSVVVHWTGESLACKVCGAACANKKSLDKHHYIVHAKHQVFKCERCDKYFSRKYHLDRHVVQTGCDGKSRASYACQVCNKVFTRKDNLREHLRMHAGAPQRQKKAVCSQCSKEFYTVQQLVIHERTHTGERPISCDLCKKTFLSTPAMKKHRRVHTGEKPFQCKFCDKRFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGEFAFYCEVCGKAFNRKTRLTVHMKFVHEGATPFQCEVCEKSFIRKEDLARHSVLHTGIKPHKCAKCSKTFAVKSALRVHMNTHRRELPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDAMAEAEKRRLQKQLFNIASTAAAKSRTEGSPVTILSQDKLLKTIVELLTLLVEEDTLQVFGWPEAPIQDVLEAVIRRCGHQPVSSDSDLLFAQRLRENVKILFTVVIEDETVKSLLTTQTVDEVILHVLKLAKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01413605; iTF_00060533; iTF_01414389; iTF_01411740; iTF_01412541; iTF_00719617; iTF_01200367; iTF_00938938; iTF_00939799; iTF_01303645; iTF_00175895; iTF_00175230; iTF_00174480;
- 90% Identity
- -
- 80% Identity
- -