Basic Information

Insect: Athalia rosae
Gene Symbol: su(Hw)
Assembly: GCA_000344095.2
Location: NW:1157551-1162622[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0026 0.17 11.7 0.1 1 20 67 86 67 88 0.94

2 13 0.0002 0.013 15.1 1.1 1 19 163 181 163 186 0.95

3 13 0.03 2 8.3 3.7 3 23 194 215 193 215 0.97

4 13 8e-05 0.0053 16.4 3.6 1 21 221 241 221 242 0.94

5 13 1.2e-08 7.9e-07 28.5 1.0 1 23 253 275 253 275 0.98

6 13 8.8e-05 0.0057 16.3 0.3 3 23 287 307 286 307 0.98

7 13 0.011 0.74 9.7 0.7 2 23 314 335 313 335 0.96

8 13 1.3e-05 0.00088 18.9 5.2 1 23 341 363 341 363 0.99

9 13 8.2e-06 0.00054 19.5 2.1 1 23 369 391 369 391 0.94

10 13 1.1e-06 7.4e-05 22.3 1.2 1 23 397 420 397 420 0.95

11 13 5.3e-06 0.00035 20.1 0.8 1 23 426 448 426 448 0.91

12 13 2.7e-07 1.8e-05 24.2 1.8 1 23 454 476 454 476 0.98

13 13 2.2e-07 1.5e-05 24.5 2.1 2 23 483 505 482 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0026	0.17	11.7	0.1	1	20	67	86	67	88	0.94
2	13	0.0002	0.013	15.1	1.1	1	19	163	181	163	186	0.95
3	13	0.03	2	8.3	3.7	3	23	194	215	193	215	0.97
4	13	8e-05	0.0053	16.4	3.6	1	21	221	241	221	242	0.94
5	13	1.2e-08	7.9e-07	28.5	1.0	1	23	253	275	253	275	0.98
6	13	8.8e-05	0.0057	16.3	0.3	3	23	287	307	286	307	0.98
7	13	0.011	0.74	9.7	0.7	2	23	314	335	313	335	0.96
8	13	1.3e-05	0.00088	18.9	5.2	1	23	341	363	341	363	0.99
9	13	8.2e-06	0.00054	19.5	2.1	1	23	369	391	369	391	0.94
10	13	1.1e-06	7.4e-05	22.3	1.2	1	23	397	420	397	420	0.95
11	13	5.3e-06	0.00035	20.1	0.8	1	23	426	448	426	448	0.91
12	13	2.7e-07	1.8e-05	24.2	1.8	1	23	454	476	454	476	0.98
13	13	2.2e-07	1.5e-05	24.5	2.1	2	23	483	505	482	505	0.97

Sequence Information

Coding Sequence: ATGTCTCAAATaatagaaattgtgaaaattgaacacCCTGAAACAACGAAGCAAGAGAATGTACAGGAGGAGGTCGAACTTATATTCGGTGACTCACCGAACGAAAACGATGTACAGGCTGCAGTTACTCAGGGGGAATTGGTTTTCACTGCTCAAACTATTGCACACAATAcccaaataattcaaattgtaACCGATTATGAATGCGTGACCTGCCGTCGAATATTCACATCTGAAAATTTGCTGAAGGACCATCTAGAGGTATGCCGAGATGAAGATGATCGTTCGGATACTCTAGAGATTGGGCAAATAGCGTATAATTCAGATGATGAGGGTGTCGATGATCCACTTCACGATAATCAAGACAGCAAAAATGAAGTGAGAGGatcaaagaataataatgGCAAAACTGCTATAAACCCGGTAGATACAGGAAAATGTCACTGCTGCGCAGAAGATCTAGCTACAGCACATACCGGGGGAAGGTTTAAATGTTCaaaatgtgatttttatttcaagaagGCTTCATCTCTCGAAAGACATGATATTGTAATTCACTGGGGAGGTGAAACTCTCCTTTGCAAAGTTTGTGGTGTTCCATGTAACAATAAAAGGAGCCTGGATAAACATCACTACACTTATCATGCCCAGCAACAAGTCCACAAATGTGAACGTTGCGATAAGTATTTTTCCCGGAAGTACCATTTGGACCGACATGTGATGCAAACTGGATGCGATGGTGTATCCCGTGCCAATTACATTTGCCAAGTTTGCAATAAAGTATTTACCCGTAAGGATAACTTACGCGAGCATTTGCGTATGCATGCCGGAGCACCacagagacaaaaaaaggCAGCTTGCTCTTACTGCTCCAAAGAATTCTACACTAATCAACAGCTGGTGATTCACGAGCGTATTCATACCGGGGAGCGCCCTATTTCGTGTGATTTGTGCTCCAAGACGTTCCTCTCAACTCctgcaatgaaaaaacatcGTCGTGTCCACACTGGCGAGAAGCCATTCAAATGCAAGTTTTGTGACAAGAAATTCGCTGCTCGTGAAACCTTGAATCGCCATCATCGAACACATACTGGAGATAAACCACACGTCTGTCAGTATTGTGGTAAAACATTTATACAGGCGGTTCAACTCCGAGCACACGTTTTCCATCACACAGGAGAAAATGCATTCTACTGCGATGAATGTGGCAAGGCATTTAATCGCAAAACGCGCCTTACCGTACACATGAAGTTCGTCCATCAAGGAGCCGTACCATTCCAGTGCAAAGTatgtgaaaaatcgttcattCGCAAAGAAGATCTTTCCAGACATTCTGTTCTTCATACTGGAATAAAACCACATCAATGCGAGAAATGTTCAAAATCATTTGCGGTAAAATCCGCCCTACGTGTTCACATGAATACGCACAGACGTGAAGTGCCACAATCTTGCGATGAGTGTGGGCGTGCATTCATTAGACAAGATTGTTTAATGCGGCATATGCGAACCAAACATAGGGATATGCTAGAAGATGCGATGGCAGAAGCTGAGAAACGTCATTTACAGAAACAACTATTCAAAATTGCAACCACCGCAGCTACAAAATCAACTGAGGGAGCTCCTGTTACAATTTTATCCCAAGACAAATTACTTAAAGCTATTGTGGAGTTATTGACACTACTTGTCGAAGAAGAAACTTTACAGgctTTTGGCTGGCCTCAAGCACCGATTCAAGATGTACTGGAAGCTGTCATACGGCGCTGTGGACATCTGCCGCTTTCTTCGGATAGTGATCTGCTGTTTGCTCAGCGTCTGAGAGagaacgtaaaaattttgttcaccgTGGTGATCGAAGATGACACTGTAAAATCACTTTTGACAACACAAACTGTTGATGAGGTAATTCTACACGTTCTTAAGTTATccaaagataaataa
Protein Sequence: MSQIIEIVKIEHPETTKQENVQEEVELIFGDSPNENDVQAAVTQGELVFTAQTIAHNTQIIQIVTDYECVTCRRIFTSENLLKDHLEVCRDEDDRSDTLEIGQIAYNSDDEGVDDPLHDNQDSKNEVRGSKNNNGKTAINPVDTGKCHCCAEDLATAHTGGRFKCSKCDFYFKKASSLERHDIVIHWGGETLLCKVCGVPCNNKRSLDKHHYTYHAQQQVHKCERCDKYFSRKYHLDRHVMQTGCDGVSRANYICQVCNKVFTRKDNLREHLRMHAGAPQRQKKAACSYCSKEFYTNQQLVIHERIHTGERPISCDLCSKTFLSTPAMKKHRRVHTGEKPFKCKFCDKKFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGENAFYCDECGKAFNRKTRLTVHMKFVHQGAVPFQCKVCEKSFIRKEDLSRHSVLHTGIKPHQCEKCSKSFAVKSALRVHMNTHRREVPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDAMAEAEKRHLQKQLFKIATTAATKSTEGAPVTILSQDKLLKAIVELLTLLVEEETLQAFGWPQAPIQDVLEAVIRRCGHLPLSSDSDLLFAQRLRENVKILFTVVIEDDTVKSLLTTQTVDEVILHVLKLSKDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00159274;
90% Identity: iTF_00175230; iTF_00174480;
80% Identity: -