Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: su(Hw)
Assembly: GCA_944452905.1
Location: CALYCC010000214.1:211659-215833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.25 12.8 0.1 1 20 68 87 68 89 0.95

2 13 4e-05 0.0061 17.9 0.4 1 23 165 188 165 188 0.96

3 13 0.013 2 9.9 1.9 2 23 195 217 194 217 0.94

4 13 3.6e-05 0.0056 18.0 2.7 1 21 223 243 223 244 0.95

5 13 5.2e-08 8e-06 26.9 2.4 1 23 255 277 255 277 0.98

6 13 0.0003 0.047 15.1 3.0 2 23 288 309 288 309 0.98

7 13 0.012 1.8 10.1 0.9 2 23 316 337 315 337 0.97

8 13 4.3e-05 0.0067 17.8 4.5 1 23 343 365 343 365 0.99

9 13 1.2e-05 0.0018 19.5 2.1 1 23 371 393 371 393 0.94

10 13 2.2e-06 0.00034 21.8 1.1 1 23 399 422 399 422 0.95

11 13 7.4e-05 0.011 17.0 0.4 2 23 429 450 428 450 0.90

12 13 5.7e-07 8.8e-05 23.7 2.3 1 23 456 478 456 478 0.98

13 13 3.2e-07 4.9e-05 24.5 2.1 2 23 485 507 484 507 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.25	12.8	0.1	1	20	68	87	68	89	0.95
2	13	4e-05	0.0061	17.9	0.4	1	23	165	188	165	188	0.96
3	13	0.013	2	9.9	1.9	2	23	195	217	194	217	0.94
4	13	3.6e-05	0.0056	18.0	2.7	1	21	223	243	223	244	0.95
5	13	5.2e-08	8e-06	26.9	2.4	1	23	255	277	255	277	0.98
6	13	0.0003	0.047	15.1	3.0	2	23	288	309	288	309	0.98
7	13	0.012	1.8	10.1	0.9	2	23	316	337	315	337	0.97
8	13	4.3e-05	0.0067	17.8	4.5	1	23	343	365	343	365	0.99
9	13	1.2e-05	0.0018	19.5	2.1	1	23	371	393	371	393	0.94
10	13	2.2e-06	0.00034	21.8	1.1	1	23	399	422	399	422	0.95
11	13	7.4e-05	0.011	17.0	0.4	2	23	429	450	428	450	0.90
12	13	5.7e-07	8.8e-05	23.7	2.3	1	23	456	478	456	478	0.98
13	13	3.2e-07	4.9e-05	24.5	2.1	2	23	485	507	484	507	0.97

Sequence Information

Coding Sequence: ATGACGGGTATCAACTTACTTGCGTTTACAGAAATCGTTAAAATCGAACATCCCATCACGGCGAAGGAGGAGGACTTAGAAATTTCATTCGGTGACTCACAAAACGAAAATGCTCTACAGGCTGCAGATGCTCAGGAGGAAATGATTTTCAACGGAGAGACAATCTCCCAAGATACGCAAATAATTGAAATCGTAACGAATTACGAATGCGTTACTTGCAGGCGTATATTCACATCTGAAGATACGTTGAAAGATCATTTGGACGTATGTAGAGACGAAGATGACCGGTCAGATACTTTAGAAATCGGTCAAATAGCTGATTACGATTCAGAAGAGGAGGAATATGTCGACGATCCGGATGACGATTCGAAAAGTGGAACTGATGCGGAAACTCCTAAGAACAACAACGGATCGACTGCTATAAAGCCCGTATCACCTGACAAATGCCATTGCTGTGGTGAAGATTCGTCGACGGCGCATAGCGGAGGAGATTACAAGTGTGGGAGTTGCTCGTTTTCATTTAAAAGATCGGCGGCCTTAGAAAGGCACAGAATCGTCATACACTACCAACAAGAATCCTTGATTTGTAAAGCTTGCGGAATTACTTGCGGGAACAAAAAGGCCCTGGAAAAACACCACTACACTGTTCATGCCAAGCATCAAATATTTAAGTGCGAACGCTGCGACAAATACTTTTCAAGAAAATATCACTTGGACAGACACGTCATGCAAACTGGATGCGATGGTGTGGCTCGTTCCAGTTATGCTTGCCAAGTTTGCCACAAGGTGTTTACCCGCAAGGACAACTTGCGAGAACATTTGCGTATGCATGCCGGAGCCCCGCAGAGACAGAAAAAGGCAGAATGCAGCCATTGCTCTAAGAAATTTTACACCACTCAACAATTGGCGATAcacgaacgaactcacaccggggaacgaccggtttcatgcgacctgtgtaaaaagactttcctctcaacacctgcgatgaaaaaacacaggcgtgttcatacgggggaaaaaccattccagtgtaaattttgcgagaaaagatttgcagcccgcgaaactttgaatcgccatcaccgtacccacaccggagataaaccccacgtttgtcaatattgcggtaaaacgtttatccaagcagttcagttgcgggctcacgtattccatcatacaggagaaaatgcattctactgcgaggtttgcggcaaggcattcaatcgcaaaacccgactgactgtacacatgaaatttgttcacgaaggagctgagccgttgcagtgcaacgcttgcgacaagtcttttgttaggaaggaGGATCTCTCCAGACATTCCGTTCTTCACACTGGAATCAAGCCACACAAATGCGACAAATGTTCAAAGACATTCGCAGTAAAGTCTGCGCTGCGAGTTCATATGAATACCCACAGACGTGAGATGCCACAATCTTGTGACGAATGTGGACGAGCATTTATTAGACAAGACTGTCTTATGAGACACATGCGAACCAAGCACAGAGACATGCTAGAAGACGTCGTCGCAGAAGCTGAGAAGCGCCGCTTGCAGAAGCAGCTGTGTAAAATTGCTTCCAGTGCTGCTGCAAAGACAAAAGGCGTTAAATCAACAGTTACTGTACTGTCACAAGATAAATTACTCATAGCCATCGTAGAACTGCTCACCCTTCTTGTAGAGGAAGAAACTTTGCAGGCTTTTGGATGGCCCGAAGCACCAATTCAAGATATTCTGGAGGCCGTAATCAAGCGTTGTGGACATCAACCTATTCCGTCAGATAGTGATTTATTATTCGCTCAACGTCTAAGAGAGAATGTTAAGATATTATTTACTGTCGTTATCGAAGACGAAACTGTCAAGTCACTTTTGACCACTCAAACTGTGGACGAGGTGATTTTACATGTCTTAAAGTTGTCCAAAGAAAAATGA
Protein Sequence: MTGINLLAFTEIVKIEHPITAKEEDLEISFGDSQNENALQAADAQEEMIFNGETISQDTQIIEIVTNYECVTCRRIFTSEDTLKDHLDVCRDEDDRSDTLEIGQIADYDSEEEEYVDDPDDDSKSGTDAETPKNNNGSTAIKPVSPDKCHCCGEDSSTAHSGGDYKCGSCSFSFKRSAALERHRIVIHYQQESLICKACGITCGNKKALEKHHYTVHAKHQIFKCERCDKYFSRKYHLDRHVMQTGCDGVARSSYACQVCHKVFTRKDNLREHLRMHAGAPQRQKKAECSHCSKKFYTTQQLAIHERTHTGERPVSCDLCKKTFLSTPAMKKHRRVHTGEKPFQCKFCEKRFAARETLNRHHRTHTGDKPHVCQYCGKTFIQAVQLRAHVFHHTGENAFYCEVCGKAFNRKTRLTVHMKFVHEGAEPLQCNACDKSFVRKEDLSRHSVLHTGIKPHKCDKCSKTFAVKSALRVHMNTHRREMPQSCDECGRAFIRQDCLMRHMRTKHRDMLEDVVAEAEKRRLQKQLCKIASSAAAKTKGVKSTVTVLSQDKLLIAIVELLTLLVEEETLQAFGWPEAPIQDILEAVIKRCGHQPIPSDSDLLFAQRLRENVKILFTVVIEDETVKSLLTTQTVDEVILHVLKLSKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00159274;
90% Identity: iTF_01413605;
80% Identity: -