Basic Information

Gene Symbol
nfxl1
Assembly
None
Location
CADEBC010000526.1:1140478-1142949[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 1.8e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.014 1.3e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 19 3.1e-07 0.0028 17.7 15.9 3 19 186 202 185 202 0.95
4 19 1.7 1.6e+04 -3.9 0.9 6 18 227 231 226 232 0.49
5 19 1.7e-08 0.00016 21.7 11.9 3 18 239 254 237 255 0.91
6 19 1.3 1.2e+04 -3.5 1.3 6 10 280 284 279 284 0.89
7 19 1.5e-10 1.4e-06 28.3 12.3 1 19 290 308 290 308 0.99
8 19 2e-06 0.019 15.0 19.7 3 19 345 361 337 361 0.86
9 19 2 1.8e+04 -5.3 2.2 5 10 384 389 384 389 0.88
10 19 5.9e-06 0.055 13.6 18.3 1 18 395 412 395 413 0.97
11 19 3.2e-10 2.9e-06 27.2 13.9 1 19 422 440 422 440 0.99
12 19 0.00073 6.8 6.9 7.2 10 19 489 498 487 498 0.91
13 19 0.0048 44 4.3 10.8 1 12 508 518 508 518 0.96
14 19 0.35 3.2e+03 -1.7 3.3 14 18 547 551 547 552 0.85
15 19 0.12 1.1e+03 -0.2 0.4 7 12 567 572 567 579 0.86
16 19 5.8e-05 0.54 10.4 3.8 1 11 588 598 588 599 0.97
17 19 0.00015 1.3 9.1 17.2 3 18 629 645 628 646 0.82
18 19 2 1.8e+04 -6.5 3.4 9 13 652 656 652 656 0.71
19 19 2.4e-06 0.022 14.8 12.9 1 16 687 701 687 706 0.90

Sequence Information

Coding Sequence
ATGGCGCGTAGATATCGAGATGCCGCTGCAAAATTACAGCAAAATGTTCAGAAACATTTGAAGGATATGAAAGAATTATCCTCTTCGGAGGACGAGGAACCATACGAAACTAGTGTTCTCGAAGGTGTATTCCAGAGTTATTCGAGAGGCGGTGGTGACACGTCCATGCTAAATAGAACAAAGAATCTTCTAGAAGAAGCCATCAGCGGCCGCTCTGTCACTTGTCTTATATGTATAGGTTCCATTAAAAGACTACACGCTATTTGGACATGTGAACACTGTTTTTCTTACTTTCATTTGTCTTGCATACAAAAATGGTCCAACGACAGTATCAGCTTACGTAGTGAAGAGAATCAAGGTCCAATTGCTGTGTGTAAGCCGAAGAAAATCGAATGGTGCTGTCCTAAATGTCGACAGTCTTACACTAAAGAAGAGATCCCAAGGAAATATCGATGTTTTTGCGGTAAAACTGATGATCCACAAAATCACCCGTGGCTCATACCGCATACATGTGGAGAGGTATGTGAAAAAAGATTATCAGTAGGAGAAAATTGTAAGCATAAATGTTTGCTTCTCTGCCACCCTGGCCCCTGCCCGCCTTGCCCTCAGACTGTGAATGGAGTGTGTTATTGTGAAAAAGAGCGCAAGAGAGTGAGATGTAGTGCAGCTCACTGGTCTTGTGGTAAACCTTGTAAGAAAACACTATTGTGTAGAActcataaatgtgaaaatgtatGCCATGAGGGCGACTGTGATCCGTGCAACTACAGTAGCACCCAGACTTGTCAGTGTAAAGCTGAGAAAACTAAGAGACCATGCAACAATCCATTCTGGCAATGCAGCAAGGTATGCAACAAATTATACACCTGTGGCTACCACAGATGTGAGAGAGTCTGCCACTCTGGTGACTGTGGCTCCTGTCCCAATTCGGGTATGTCATCTTGCCCGTGTGGTGCAAACCAACGCTTTGTGCAATGCCCTGATGTTATGGAAACTTGTCTTGGTACATGTGGAAGGAAACATAATGACTGTGAACACAACTGCCCAGAAAAATGTCACAAAGGGCCATGCCCACCGTGCCAAGTGTTGGTTCAGAAGAAGTGCCAATGTACAATGCATACCAGATCATTACCGTGCAGTAAAGAATTCAAATGTGAAACTAAATGCAAGGGAACTAGACCATGTGGCAAACACGGTTGTGCACGGAAGTGTTGTAATGGTAACTGTCCAccgtgtgaaaaaatatgtgataAACCTCTTCAATGTGGTAGACATAAATGCACAAGTATTTGTCATCGTGGACCCTGCTACCCATGTCCTAGggaatcaaaagtaacttgcagATGTAAGGAAACATACATTACAGTCCTATGTGGAAGGGAGAGACACACTAAACCCCCAAAATGTTCAATGCTATGCAAACTTAAGTATAAATGTGGTCATGTAGAGGAAAATAGACACTCTTGCCATTTTGGAGAATGTCCACCTTGCAAAGCAATATGTGACAAGCAATATCCAAAATGTGGACATCATTGTGAAGCAGTATGCCATGAATATGTGGCTGTTGTTTTTAAACAGGTTGAAAAGCCTGCTACACCCTGGGAGGTTCAACCaccaaaaactaaaataatgacTTTGGAATGTCCTCCATGCAATACACCGGTTCCAATAGTATGTTTCGGAGAACATGAGACTGATGAACAGCCTTGTCACTCTGCTACTAGAAGACCTTGCGGAAGAGAATGTGGACGTCTACTTGCTTGCAGTAACCACAAGTGCTCCTTACTATGTCATCTCTATAGTCCAGTTGCTGAGTACCCAAATGTGCCATCCAGTTGCCGACAGTGTAACCAAGAATGTTTAGTTTCACGTCCAGAAAAATGTACACACAAGTGTCCAAAGCGTGCCTGCCATCCTGGTCCTTGTCCTCCCTGTGAAGTACTAGAAAGGCTTCCTTGCCACTGTGGcataacagaaatatatttacgtTGCCGAGAAATATCTGTTGCCACTGAGGAAAATTTATCATGCAAGCAACAGTGTCCAAAGAATCTGGAATGTGGCCACCGTTGCCGCAATACATGTCATTCGGGGCCTTGTGGGAATCAGATATGTACTAAAAAGACTAAGATACACTGCACATgtggtaatattaaaaaagaagctCCATGCAATGCTGTCCGTAGtggagaaataaaaatactttgtgaTGCAACATGTGAAGCTAAGAAGATAGCAGCAAAGATAGAAAGTGAAAAAGAGAAGCAAAGACTAAAAGCGTTGGAGGAGGAAAAGAATAGAAAAGAGTTGGCTGAATATGAATGGAAATTAAGTGGtaagaagaagaaatataaagaaaagagGGTAGTTGTTAATACAGATGATAGAGGAGTGTTACAAAAATACTGGATACCAATATTGTCTGTAATTATAGCTATATTAGGGGCTTGTTATTacgtattttatgtataa
Protein Sequence
MARRYRDAAAKLQQNVQKHLKDMKELSSSEDEEPYETSVLEGVFQSYSRGGGDTSMLNRTKNLLEEAISGRSVTCLICIGSIKRLHAIWTCEHCFSYFHLSCIQKWSNDSISLRSEENQGPIAVCKPKKIEWCCPKCRQSYTKEEIPRKYRCFCGKTDDPQNHPWLIPHTCGEVCEKRLSVGENCKHKCLLLCHPGPCPPCPQTVNGVCYCEKERKRVRCSAAHWSCGKPCKKTLLCRTHKCENVCHEGDCDPCNYSSTQTCQCKAEKTKRPCNNPFWQCSKVCNKLYTCGYHRCERVCHSGDCGSCPNSGMSSCPCGANQRFVQCPDVMETCLGTCGRKHNDCEHNCPEKCHKGPCPPCQVLVQKKCQCTMHTRSLPCSKEFKCETKCKGTRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTSICHRGPCYPCPRESKVTCRCKETYITVLCGRERHTKPPKCSMLCKLKYKCGHVEENRHSCHFGECPPCKAICDKQYPKCGHHCEAVCHEYVAVVFKQVEKPATPWEVQPPKTKIMTLECPPCNTPVPIVCFGEHETDEQPCHSATRRPCGRECGRLLACSNHKCSLLCHLYSPVAEYPNVPSSCRQCNQECLVSRPEKCTHKCPKRACHPGPCPPCEVLERLPCHCGITEIYLRCREISVATEENLSCKQQCPKNLECGHRCRNTCHSGPCGNQICTKKTKIHCTCGNIKKEAPCNAVRSGEIKILCDATCEAKKIAAKIESEKEKQRLKALEEEKNRKELAEYEWKLSGKKKKYKEKRVVVNTDDRGVLQKYWIPILSVIIAILGACYYVFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2