Axyl023432.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips xylosteana
Gene Symbol
PRDM15
Assembly
GCA_947563465.1
Location
OX387369.1:1371715-1374559[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.38 27 6.2 0.4 1 23 188 211 188 211 0.95
2 16 8.3e-05 0.006 17.7 0.9 2 23 217 238 216 238 0.97
3 16 0.0004 0.029 15.6 3.8 2 23 269 291 268 292 0.96
4 16 0.0014 0.1 13.9 0.3 1 23 382 405 382 405 0.93
5 16 0.0009 0.065 14.5 0.4 1 21 409 429 409 430 0.95
6 16 0.00072 0.052 14.8 1.1 1 23 439 462 439 462 0.97
7 16 0.092 6.7 8.2 0.5 1 23 467 490 467 490 0.91
8 16 2.2e-06 0.00016 22.7 1.1 3 23 504 524 502 524 0.97
9 16 0.0023 0.17 13.2 2.7 1 23 530 552 530 552 0.98
10 16 0.8 59 5.2 0.4 2 23 561 581 560 581 0.96
11 16 6.2e-05 0.0045 18.1 2.6 1 23 591 613 591 613 0.98
12 16 0.15 11 7.5 0.0 2 23 618 638 617 638 0.95
13 16 0.011 0.77 11.1 0.2 1 23 654 676 654 677 0.96
14 16 2e-05 0.0015 19.7 2.5 1 23 683 705 683 705 0.98
15 16 0.001 0.075 14.3 0.9 1 23 711 734 711 734 0.95
16 16 0.067 4.9 8.6 0.3 3 23 741 762 739 762 0.95

Sequence Information

Coding Sequence
ATGGAGGTTCCAGAAATAGCAGAAGAAACAGAAATAACAATAACTATTAAAGAATATGATGATTTCGACTACATAAGAGAGAATCTGAAACATGTGTTGTACCTGCCACAATTCTGCGGGATATGTTTGAAAGGGAATGAAGATTTATTTGATATTGATGGTGAATTTGAGGTAGTTACGCATAGGAAGACTGATGTAAAAGCCTTGAAGGCTATTGTTGGTTATGTGTTTAATAATCAAGTTCATGAAATTCTAGCAAGCGCCTACTTGTGCAATTCATGTATTGATCATGTATTAGAATCATACATCTTTATCTTCAACACAAAAGAGACATCCAAAATCATAAACAACTGCATAAATGAGTTAAATTACAAAGCTGTCCATGCTTTTGAACAATTAGAGGAAACAGAAAACTATGAGAACTCGGAGGTTGTTATAATATTAGAAAATAATGATACTTATTATCCTCAGCACGTCATCAAAGAAACCAAAGTCACAAAAGATATGGTAACTGTAAAAAAGAAGAAATCAAGAGTGAAAACATACAAAAAGCATGCGGGTTACCGTTGCGTTGAATGCAACATAGTAGTACAAACTTTCAAAGAATGGAAACAGCATGAGAGAGATTTTCACGAGAAACCTCAAATCCAGTGTCAGATCTGTAACAAAGTTCTAAGTAGTGAGCAAAGTCTTAAAACACACTACAAGACGCATGCCATGATGAAATGTAAGATTTGCCAATTACTGGTCCCTGATGAAGATTTAAATGAACATTTTAAATTGAATCATGAAGATGATAAGCAAACTTGCCATATATGCAACCTCTCCTTTTACACTAACAGTGAAATGAATTCACATCTAAAAATAAGCCATCATGATGAAGACGATTCTGAAGAAAACAATTCTCAATGCTTAATGTGCTTGAGACGTTTCACAGGTAATCAATTAATAGAGCACAAATGCAAATTCGGTTGTCCTGAATGCTCAGAAACACCCTGTATCCATCACAAGTACTTAATATCTTACAGAGACCAAATACGAGCGAGAGCTTCTAAAATAAAATGCATTGATTGCGACTATGTCTGTCATAAAAAGGAGTTTTTAGTTGGCCATGCTAATAGGGAACATTTAGACCATATTCCTTTTGCGTGTGACATTTGTGGCCAACGCTTTTACTCCAAAATAGGCCTCCGTGGACACATTTATCAGTTCCATACAGAAAGATACACTTGTGACTATTGCGACCAAGAGTTCAAAGGTAGCACAGGACTAGAAAACCACAAGAAGTCATGTAATGCTGAAGTTAGAAGAGAATTTGAATGTGATGAATGTCCAGCATCCTTTGATACCTTAAAATTTCTCACCAACCACAAAAAGAGAAGACACATACAGGACATTTATCCTTGTAATTTGTGCACTAAAACATTCTTGAGTGACGGGAAATTGAAAGAACATACGGTCAAGGTCCACAATGGCTTACAGAACAGAAACAGAAGGTCCTTCACTGACTGTGTCATCTGTGAGAAGAAATTTGATACAAGGAGCGACTTAAAACGCCATATCAAAACCCATGGACCAAACGCAACATTCCCCTGCAGGACTTGTAATATAGAATTTGAAACACTAAAACAATTACATGTACACAGAAGGAAGCATGTGAAATCGTATTGCGAACGTGTTCAATGCGAAGTTTGTAATGTAGAACTTCAGTCTGTATGTTTAGCCCAGCACATGTTGAGACACGCAGTGGAGTCCGGTGAAGCACCATCTTTCTCTTGTGACATTTGTGGGAAGGTCTGCTCCTCCCAAGTATATTTAAGATATCACAAGCAGAGTCATATGGAACCTGTACCTTGTCCAGAGTGCAACAAGTTAATAAAACCAGCAGGCTTGCAAAAACACATCAAATATCATGGGTATAAAGATGACCCAGTAATGAGAGCGAAAATGAAACGCAAATACAAGTGCAACCTATGTGAATACGTCGCTTCTGATCCAAGCATCTTAGAGGCTCACGTGAATCGTCACCATTTAAAAGTGAAACCATACATCTGTCCCGTCTGTCAAAAGAAGTTTTCCAACAAAATCTGCTTGCGGATGCATCTACGGCTGCATACCGGCGAAAGACCTTATTGCTGTGAAGTTTGTGCAGAAAGTTTCATATCCGCTAGTGCTCTGAAGACTCATAAAATTAAAAGACATTCTGAGAAATCTATAGCTTGCCCATTCTGTAACAGAATGTTTTACATAGCCGTAGAGATGCGGCAACATTTTAAGAAGTACCACTGGGCGCACAAGGACAGGAAGTTTGACCATAGAGAAGTGGAGGGGCTGGGCAGAGAGTACTATTATTTATTCGAAGATGGAAGAAGGCCAAGGTTGGATGATGAAGAGAGTACCAGCAATGTTATCATTGAAGAAGTAAATGAATAA
Protein Sequence
MEVPEIAEETEITITIKEYDDFDYIRENLKHVLYLPQFCGICLKGNEDLFDIDGEFEVVTHRKTDVKALKAIVGYVFNNQVHEILASAYLCNSCIDHVLESYIFIFNTKETSKIINNCINELNYKAVHAFEQLEETENYENSEVVIILENNDTYYPQHVIKETKVTKDMVTVKKKKSRVKTYKKHAGYRCVECNIVVQTFKEWKQHERDFHEKPQIQCQICNKVLSSEQSLKTHYKTHAMMKCKICQLLVPDEDLNEHFKLNHEDDKQTCHICNLSFYTNSEMNSHLKISHHDEDDSEENNSQCLMCLRRFTGNQLIEHKCKFGCPECSETPCIHHKYLISYRDQIRARASKIKCIDCDYVCHKKEFLVGHANREHLDHIPFACDICGQRFYSKIGLRGHIYQFHTERYTCDYCDQEFKGSTGLENHKKSCNAEVRREFECDECPASFDTLKFLTNHKKRRHIQDIYPCNLCTKTFLSDGKLKEHTVKVHNGLQNRNRRSFTDCVICEKKFDTRSDLKRHIKTHGPNATFPCRTCNIEFETLKQLHVHRRKHVKSYCERVQCEVCNVELQSVCLAQHMLRHAVESGEAPSFSCDICGKVCSSQVYLRYHKQSHMEPVPCPECNKLIKPAGLQKHIKYHGYKDDPVMRAKMKRKYKCNLCEYVASDPSILEAHVNRHHLKVKPYICPVCQKKFSNKICLRMHLRLHTGERPYCCEVCAESFISASALKTHKIKRHSEKSIACPFCNRMFYIAVEMRQHFKKYHWAHKDRKFDHREVEGLGREYYYLFEDGRRPRLDDEESTSNVIIEEVNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00462633;
90% Identity
iTF_01135058; iTF_01136048; iTF_00342448; iTF_00325675;
80% Identity
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