Cros003834.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000007.1:1173923-1176817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1 91 4.8 0.4 1 23 188 211 188 211 0.94 2 17 8.8e-05 0.0071 17.7 0.9 2 23 217 238 216 238 0.97 3 17 0.00048 0.039 15.4 3.0 2 23 269 291 268 291 0.96 4 17 0.00083 0.067 14.6 0.3 1 23 382 405 382 405 0.93 5 17 0.00096 0.077 14.4 0.4 1 21 409 429 409 430 0.95 6 17 0.0011 0.087 14.3 1.1 1 23 439 462 439 462 0.97 7 17 0.098 7.8 8.1 0.5 1 23 467 490 467 490 0.91 8 17 8.3e-06 0.00066 20.9 0.8 3 23 504 524 502 524 0.97 9 17 0.0024 0.2 13.1 2.7 1 23 530 552 530 552 0.98 10 17 0.86 69 5.1 0.4 2 23 561 581 560 581 0.96 11 17 6.6e-05 0.0053 18.1 2.6 1 23 591 613 591 613 0.98 12 17 0.16 13 7.5 0.0 2 23 618 638 617 638 0.95 13 17 0.011 0.9 11.1 0.2 1 23 654 676 654 677 0.96 14 17 6.9e-05 0.0055 18.0 2.1 1 23 683 705 683 705 0.98 15 17 0.00086 0.069 14.6 5.3 2 23 712 733 711 733 0.96 16 17 0.00044 0.035 15.5 0.3 1 23 739 762 739 762 0.96 17 17 0.072 5.8 8.5 0.3 3 23 769 790 767 790 0.95
Sequence Information
- Coding Sequence
- ATGGAGGTTCCAGAAATAGCAGAAGAAACAGAAATAACCATAACTTTTAAAGAATACGATGATTTCGACTACATAAGAGAAAATCTGAAGCATGTGTTATACTTACCTCAGTTCTGTGGGATATGTTTGAAAGGGAATGAAGATTTATTTGATATAGATGTTGAATTTGAAGTGGTTACTCATCGAAACACTGTTGTCAAAGCTTTGAAGGACATTGTTGATTATATCTTCAATAATCaagTCCATGATATCTTGGCTAGCGCCTACTTGTGCAACTCATGTATTGATCACGTTTTAGAATCATACATCTTTATCTTCAACACAAGAGAGACATCCAAAATCATCAACAACTGCATAAAtgagttaaattacaaaactgTCAATGCTATTGAACAATTGCAGGCAACAGAAAATTATGACAACTCAGAGGTtgttataatattagaaaataATGATACTTACTATCCTCAACATGTCATCAAAGAAACTAAAGTAACAAAAGATATGGTAACTGTGAAAAAGAAGAAATCACGAGTCAAAACATACAAAAAGCATGCTGGCTACCGTTGCGTTGAATGCAACATTATAGTACAAACGTTTAAAGAGTGGAAACAGCATGAGAGAGATTTTCATGAGAAACCTCAAATCCAATGTCAGATCTGTAACAAAGTTCTAAGTAGTGAGCAAAGCCTTAAAACACATTACAAGACGCATGCCATGACGAAATGTAAGATTTGCCAATTGTTGGTCCCTGAAGAAGACTTAACTGAACATTTTAAGTTGAATCATGAAGATGAAAAGCAAACTTGCCATAAATGCAACCTCTCCTTTTACAGTAATAGTGAAATGAATTCACACCTAAAAATAAGCCATCCTGATGAGGAGGATTCTGAAGAAAACAATTCTCAATGCATAATGTGCTTGAGACGATTCACAGGAAATCAACTAATAGAACATAAATGCAAATTTGGCTGTTCAGAATGCTCAGAAACACCATGTATCCATCACAAGTACTTGTTATCTTACAGAGACCAAGTTAGAGCGAGGGCTTCTAAGATAAAATGCATTGATTGTGATTATGTCTGCCACAAGAAAGAGTTTTTAGTTGGCCACGCAAATAGGGAACATTTAGATCATATTCCTTTTGCTTGTGACATTTGTGGCCAACGCTTTTACTCCAAAGTTGGCCTCCGAGGACACATTTATCAGTTCCATACGGAAAGGTACACTTGTGACTATTGTGATCAAGAGTTCAAAGGTAGCACAGGGCTAGAAAACCACAAGAAATCATGTAATGCTGAAGTTAGAAGAGAATTTGAATGTGATGAATGTCCAGCATCTTTTGATAGCTTAAAATTTCTTACCAACCACAAAAAGAGAAAACATGTACAGGATATTTATCCTTGCAATTTGTGTACTAAAACATTTTTGAGTGATGGTAAACTGAAAGAGCATACAGTCAAGGTTCATAACGGCTTACAGAACAGAAACAGAAGGTCCTTCACTGACTGTGTCATCTGTGAGAAGAAATTTGATACAAGAAGCGACTTAAAACGCCATCTTAAAATTCATGGACCAAACGCTACGTTCCCTTGCAGAACTTGTAATATAGAATTTGAAACTCTAAAGCAATTACATGTACACAGAAGAAAACATGTGCAATCTTATTGCGAACGCGTCCAGTGCGAAGTATGTAATGTAGAGCTACAGTCTGTCTGTTTAGCGCAGCACATGTTAAGACACGCAGTAGAGTCTGGCGAAGCGCCATCTTTTTCTTGTGATATTTGTGGGAAGGTCTGCTCCTCCCAAGTATATTTAAGATACCACAAGCAGAGCCATTTAGAACCCGTACCTTGTCCGGAgtgtaacaaattaataaaaccagCAGGCTTGCAAAAGCACATTAAATATCATGGGTATAAAGATGATCCAGTAATGAGAGCGAAGATGAAACGCAAATACAAATGTAACCTGTGTGAATATGTCGCTTCTGATCCAAGCATCCTAGAGGCTCATGTCAATCGTCACCATTTAAAAGTAAAGCCATACATCTGTACCGTTTGTGATAAAGACTTTTGCGGTAAACTGCAACTCACTAGGCACCAAGAAACTCATTATGTGACAAAAAGTCTTCACTGTGAAATCTGTCAAAAGAAGTTTTCCAACAAAATCTGCTTACGGATGCATCTAAGACTGCACACAGGTGAAAGACCGTATTATTGTGAAGTTTGTGCTGAAAGCTTCATATCAGCAAGCGCTTTGAAgacacataaaattaaaaaacactcAGAGAAATCTATAGCTTGCCCATTCTGTAACAGAATGTTTTATATCGCTGTGGAAATGCGACAGCATTTTAAGAAGTACCACTGGGCGCATAAGGACAGGAAGTTTGACCATAGAGAAGTGGAGGGGTTGGGCAGAGAGTATTACTATTTGTTTGAAGACGGAAGGAGGCCAAGATTGGATGATGAAGAGAGTGCCAGCAATATCATCATTGAagaagtaaatgaatga
- Protein Sequence
- MEVPEIAEETEITITFKEYDDFDYIRENLKHVLYLPQFCGICLKGNEDLFDIDVEFEVVTHRNTVVKALKDIVDYIFNNQVHDILASAYLCNSCIDHVLESYIFIFNTRETSKIINNCINELNYKTVNAIEQLQATENYDNSEVVIILENNDTYYPQHVIKETKVTKDMVTVKKKKSRVKTYKKHAGYRCVECNIIVQTFKEWKQHERDFHEKPQIQCQICNKVLSSEQSLKTHYKTHAMTKCKICQLLVPEEDLTEHFKLNHEDEKQTCHKCNLSFYSNSEMNSHLKISHPDEEDSEENNSQCIMCLRRFTGNQLIEHKCKFGCSECSETPCIHHKYLLSYRDQVRARASKIKCIDCDYVCHKKEFLVGHANREHLDHIPFACDICGQRFYSKVGLRGHIYQFHTERYTCDYCDQEFKGSTGLENHKKSCNAEVRREFECDECPASFDSLKFLTNHKKRKHVQDIYPCNLCTKTFLSDGKLKEHTVKVHNGLQNRNRRSFTDCVICEKKFDTRSDLKRHLKIHGPNATFPCRTCNIEFETLKQLHVHRRKHVQSYCERVQCEVCNVELQSVCLAQHMLRHAVESGEAPSFSCDICGKVCSSQVYLRYHKQSHLEPVPCPECNKLIKPAGLQKHIKYHGYKDDPVMRAKMKRKYKCNLCEYVASDPSILEAHVNRHHLKVKPYICTVCDKDFCGKLQLTRHQETHYVTKSLHCEICQKKFSNKICLRMHLRLHTGERPYYCEVCAESFISASALKTHKIKKHSEKSIACPFCNRMFYIAVEMRQHFKKYHWAHKDRKFDHREVEGLGREYYYLFEDGRRPRLDDEESASNIIIEEVNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462633;
- 90% Identity
- iTF_00156505;
- 80% Identity
- -