Pcor023741.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- -
- Assembly
- GCA_949127965.1
- Location
- OX421876.1:943576-946503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.4 26 6.2 0.4 1 23 187 210 187 210 0.95 2 17 8.8e-05 0.0057 17.7 0.9 2 23 216 237 215 237 0.97 3 17 0.00069 0.045 14.9 0.7 2 23 268 290 267 290 0.96 4 17 0.0048 0.31 12.2 0.5 1 23 381 404 381 404 0.93 5 17 0.00095 0.062 14.4 0.4 1 21 408 428 408 429 0.95 6 17 0.003 0.2 12.8 0.9 1 23 438 461 438 461 0.97 7 17 0.026 1.7 9.9 0.5 1 23 466 489 466 489 0.93 8 17 5.1e-06 0.00033 21.6 0.6 3 23 503 523 501 523 0.97 9 17 0.0015 0.097 13.8 2.4 1 23 529 551 529 551 0.98 10 17 0.85 55 5.1 0.4 2 23 560 580 559 580 0.96 11 17 0.00016 0.01 16.9 2.9 1 23 590 612 590 612 0.98 12 17 0.16 10 7.5 0.0 2 23 617 637 616 637 0.95 13 17 0.011 0.72 11.1 0.2 1 23 653 675 653 676 0.96 14 17 0.00016 0.01 16.9 1.1 1 23 682 704 682 704 0.98 15 17 0.0015 0.098 13.8 5.3 2 23 711 732 710 732 0.96 16 17 0.00043 0.028 15.5 0.2 1 23 738 761 738 761 0.96 17 17 0.072 4.6 8.5 0.3 3 23 768 789 766 789 0.95
Sequence Information
- Coding Sequence
- ATGGAGGTTCCAGAAATAGCAGAAGAAACAGAAATAACCATATCCATTAAAGAATATGACGATTTTGACTACATAAGAGAGAATCTGAAACATGTGCTATACCTGCCCCAGTTCTGCGGGATATGTTTAAAAGGAAGTGATGATTTATTCGATGTTGACGTTGAATTTGAGGTGGTTACATACCGTAGAACAGATGTGAAGGCTTTGAGAGACATTGTTGCCTATGTCTTCAATCAAgtgcAAGAAATCCTAGCAAGCACCTACTTGTGCAACTCATGTATTGATCATGTATTAGAGTCATACATATTTATCTACAACACCCGAGAGACATCCAAAATCATTAACAACTGCATAAACGAATTAAATTACAAAGCTGTTAATGCTATTGAACAATTAGAGGCAACGGAGAGTTATGAGAACTCCGAAGTTGTTATAATATTAGAAAACAATGACACCTACTATCCCCAACATGTCATCAAAGAAACCAGAGTTAATAAAGATATGGTTACTGTGACAAAGAAGAAATCACGGgttaaaacatacaaaaagcATGCTGGTTACCGTTGCGTGGAATGTAACATTGTAGTTCAAACCTTCAAGGAGTGGAAACAGCATGAGAGAGATTTCCATGAGAAACCTCAAATTCAATGTCAGATCTGTAACAAAGTTCTAAGCAGTGAGCAAAGTCTTAAAACACACTACAAAACTCATGCTATGACGAAATGTAAGATTTGCCAATTGCTGGTTCCAGAAGAAGACTTGAATGAACATTTTAAGTTAAATCATGAAGATGATAAACAAACTTGCTATCTGTGTGACCTCTCTTTTTACACTAATAGCGAAATGAATTCCCATCTAAAAATAAGCCATCCTGTTGAAGAGGGATCTGAAGAAAACAACTCTCAATGCTTAATGTGCTTGAGACGTTTTACAGGAAACCAATTAACAGAACATAAATGCAAATTCGGTTGTCCAGAATGCCCAGAAACACCCTGTATCCATCACAAATACCTAATATCTTACAGAGATCAAATACGAGCAAGAGCTTCGAAGATAAAATGCATTGATTGCGACTATGTCTGTCATAAAAAGGAGTTTCTAGTTGGACATGCTAATAGGGAACACTTAGACCACATTCCTTTTGCATGCGACATTTGCAATCAACGTTTTTACTCCAAAATAGGCCTCCGAGGACACATTTACCAGTTCCACACAGAGACCTACACTTGTGACTATTGTGATCAAGAGTTCAAAGGTAGCACAGGACTTGAAAACCACAAAAAGTCGTGCAATGCTGAAGTTAGAAGGGAATTTGAATGCGACGAATGTCCAGCGTCATTTGATAGCATAAAGTTTCTCACCAACCACAAGAAGAGGAAGCATATACAGGATATTTATCCTTGCAATTTGTGTACAAAAACATTCTTGAGCGAGGGCAAACTGAAAGAACATACAGTAAAAGTCCACAGTGGTTTGCAGAACAGAAACCGAAGATCCTTCACTGATTGCGCCATCTGTGAGAAAAAATTCGATACGCGGGGCGACTTAAAACGCCATATCAAGACCCATGGACCAAACGCTATGTTCCCTTGCAGAATGTGTAATATAGAATTTGAGACCCTGAAACAATTGCATGTACACAGGAGGAAACATGTGAAATCTTATTGCGAACGTGTTCAGTGTGAAGTGTGCAATGTAGAGCTTCAGTCTGTATGCTTAGCTCAACATATGTTAAGGCATGCAGTGGAGTCTGGTGAAGCGCCGTCTTACTCTTGTGATATATGTGGGAAGATCTGCTCTTCCAAAGTTTATTTACGATATCACAAACAAAGCCACATGGAACCCGTGCCTTGTCCAGAGTGCAACAAATTAATCAAACCCGCAGGCTTGCAAAAACACATCAAGTATCATGGGTATAAAGATGACCCTGTAATGAGAGCGAAGATGAAACGCAAATACAAATGCAACCTGTGTGAATATGTCGCTTCTGATCCCAGCATCCTAGAGGCTCATGTGAACCGTCACCATTTAAAAGTGAAACCGTACATTTGCCCCGTTTGCGAGAAAGATTTTTGTGGTAAACTACAGCTTAGTAGGCATCAGGAAACTCATTACGTGACAAAGAATCTCCACTGCGAAGTGTGTCAAAAGAAGTTTTCTAACAAAATCTGCCTGCGGATGCATTTAAGACTGCATACAGGCGAACGGCCTTATTACTGCGAAGTTTGTGCAGAAAGTTTTATCTCGGCTAGTGCTTTAAAGACACATAAGATCAAAAGACATTCGGAGAAGTCTATTGCGTGCCCATTCTGTAACCGAATGTTTTACATCGCCGTTGAGATGCGGCAACATTTTAAAAAGTACCACTGGCCGCATAAAGACAAGAAATTTGACCATAGAGAGGTAGAGGGGTTGAGCAGAGAGTATTATTATTTGTTCGAAGATGGCAGAAGGCCACGGTTGGATGATGAGGAGTGTACTAGCAATGTCATCATTGAAGAAGTAAACGAATAG
- Protein Sequence
- MEVPEIAEETEITISIKEYDDFDYIRENLKHVLYLPQFCGICLKGSDDLFDVDVEFEVVTYRRTDVKALRDIVAYVFNQVQEILASTYLCNSCIDHVLESYIFIYNTRETSKIINNCINELNYKAVNAIEQLEATESYENSEVVIILENNDTYYPQHVIKETRVNKDMVTVTKKKSRVKTYKKHAGYRCVECNIVVQTFKEWKQHERDFHEKPQIQCQICNKVLSSEQSLKTHYKTHAMTKCKICQLLVPEEDLNEHFKLNHEDDKQTCYLCDLSFYTNSEMNSHLKISHPVEEGSEENNSQCLMCLRRFTGNQLTEHKCKFGCPECPETPCIHHKYLISYRDQIRARASKIKCIDCDYVCHKKEFLVGHANREHLDHIPFACDICNQRFYSKIGLRGHIYQFHTETYTCDYCDQEFKGSTGLENHKKSCNAEVRREFECDECPASFDSIKFLTNHKKRKHIQDIYPCNLCTKTFLSEGKLKEHTVKVHSGLQNRNRRSFTDCAICEKKFDTRGDLKRHIKTHGPNAMFPCRMCNIEFETLKQLHVHRRKHVKSYCERVQCEVCNVELQSVCLAQHMLRHAVESGEAPSYSCDICGKICSSKVYLRYHKQSHMEPVPCPECNKLIKPAGLQKHIKYHGYKDDPVMRAKMKRKYKCNLCEYVASDPSILEAHVNRHHLKVKPYICPVCEKDFCGKLQLSRHQETHYVTKNLHCEVCQKKFSNKICLRMHLRLHTGERPYYCEVCAESFISASALKTHKIKRHSEKSIACPFCNRMFYIAVEMRQHFKKYHWPHKDKKFDHREVEGLSREYYYLFEDGRRPRLDDEECTSNVIIEEVNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00462633;
- 90% Identity
- iTF_00156505;
- 80% Identity
- -