Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:3140554-3170201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.092 13.9 3.2 1 23 312 334 312 334 0.99

2 11 0.056 3.8 8.8 2.0 2 23 342 363 342 363 0.97

3 11 5.9 4e+02 2.4 0.0 2 17 368 383 367 390 0.74

4 11 0.29 20 6.5 4.9 1 23 396 418 396 418 0.97

5 11 5.5e-06 0.00037 21.4 1.5 2 23 423 444 422 444 0.96

6 11 0.045 3 9.1 1.4 1 23 450 472 450 472 0.97

7 11 0.044 3 9.1 1.6 2 21 479 498 478 503 0.92

8 11 0.11 7.7 7.8 0.2 1 14 511 524 511 534 0.77

9 11 0.0096 0.65 11.2 0.4 2 23 541 565 540 565 0.94

10 11 2.5e-06 0.00017 22.5 1.5 1 23 574 596 574 596 0.98

11 11 0.049 3.3 9.0 0.1 1 23 602 625 602 625 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.092	13.9	3.2	1	23	312	334	312	334	0.99
2	11	0.056	3.8	8.8	2.0	2	23	342	363	342	363	0.97
3	11	5.9	4e+02	2.4	0.0	2	17	368	383	367	390	0.74
4	11	0.29	20	6.5	4.9	1	23	396	418	396	418	0.97
5	11	5.5e-06	0.00037	21.4	1.5	2	23	423	444	422	444	0.96
6	11	0.045	3	9.1	1.4	1	23	450	472	450	472	0.97
7	11	0.044	3	9.1	1.6	2	21	479	498	478	503	0.92
8	11	0.11	7.7	7.8	0.2	1	14	511	524	511	534	0.77
9	11	0.0096	0.65	11.2	0.4	2	23	541	565	540	565	0.94
10	11	2.5e-06	0.00017	22.5	1.5	1	23	574	596	574	596	0.98
11	11	0.049	3.3	9.0	0.1	1	23	602	625	602	625	0.94

Sequence Information

Coding Sequence: ATGGCTTCAGAATACGATAATACTTCGCTAAATTACATTTGCGTGGGCTGTCTAAGTGTAGATCGTAAGTTAAGTACAATTTATGATGCAGAATACAAACGTATTTTTGAAGACATATTGGACTCCATGGACCAAGTAAAGAAAGAATTGCTGCTGTGTTGGGAGTGTACCGCTATAGTTAGGTCTGTTATACGGTTCAAGAAGCAAGTTAGGACGGCTCATGATTGCTTGGTCAGATATATGGTCTGCGGAACAACCCACATAGAGTCTCTATCAATGTTGACAAGCACAATCTGTAACACAACTGACAATTACTATAACGATTCATCCAATGATGACAAATCAACGATCGATGACAAAACAGACGCTTGTTTCAATTACGGAATCAATTTCCTAAGTTCTAAAGTGACTTCTGATCTGTCTGGTGCTGACTTAGGTTTACAAAATACGTCTTTTAATGCCGATGTTGGTATACCTAAAGAACAAGAGACTCAGCCTGTGTTTGTGAAAATTGAAGACAGTGATTTTGATTTTGTTGAACATTTGTATGAGGACGAAAATGTAACGCTTGAGGATAAAGCAGAGATAGAACCAAAGCCCAATAATTCTGAGGTACCAGGTAAAAAGTCAAAAAGCAAGAAAAAGAAGAGGGCGAAGGTTAAATACGACGCGTCTGATGACGAGCCTCTGAAGCCGCGGAAGAAAGAACGGAAGAAAAAGAGAGAAGATACAGGTACAGATGATGGGTCAGTGAAGAAACGTCGCAGCAAGAAGGAGAAAGCGGCAGGCGTGGTCACCAACTCGAGGGTCCACAGGAACCTGGAGCAGCTGAACGTGGCGGAAGGCCAGATTGAAATGGTGGTGCTGAGCTGGGAGGAGGTAGAAGCTGAGCGCCAGAAAGCGTTGTCAAGCGTCGTGTTCACGCGGCACGAGTACAGGTGCTACGACTGCGCGCTCGGGTTCAACCACCGGTTCAAGCTGGAGAACCACATGAACAAACATTCACCGTCCGCAGGTCCGGCGGAGTGTCCCGTGTGCCGTGTTCGGTGCCGCGACGACCACGCGCTCGTCGCGCACAAGCGGCGGCATCGCGTGCGATGGCGTTGCGTGGAGTGCGGCGAGGCGTCGTCGCGCGCGGCCGTGGCGGCCGACCACGCTGCGCGCGCGCACGGCGCCGCCCCCACGCACACCTGCAAGCAGTGCGGACTCACACACCAGTCTTTGGCGAAACTACGTAACCATATGAAAAATCACGCTGAAAGGCAGAAATGTGAACTCTGCGGGAAAACGTTCAGGGATCGGACCTCACTACGGACGCACTTGTTTATACACAGAGGTGAGAAGGAGTACTCGTGTCCGCATTGCGCTAAGAAGTTCCTGTTCAAGAAGGCGATGGAGGTGCATTTGGTCACGCACTCGGCGCCGGCGCAGCTCTACTGCCTGGAATGCGACATGACGTTCAAAAACAGGATGTCCTATTACCAACATAAGAAATACAACTTGAAGCACATCGACCCGGCGAAACTGAAGTACGAATGCCCTCTCTGTGACAAGAAGTTCCTGAAAGCGGTTCGCTTGGAGGAGCACAACTTCGCCGTCCACCTCAAAGTCACGCCGATTCGCTGCACCATGCCAGACTGCGATTTCGCGTGTTCGTCCCGCCCCGTGCTGCGCACGCACATCCGCATGATCCATCGCAACCACCGCGCCGTCAGGAACCACGTGTGCGACACCTGTGGGAAGGCCTATACGACAAAGAAGACTCTAGAAGGCCACATGCGGTCCCACACGGGGGAACGCCCGTTCGCGTGTACTCTGTGTCCGTCCACTTTCGCATACGAAGCCGCGCTCTACAACCACGCCAAGCTTGTCCACCGCAAGGGGAAGGTTGGGCGCCGAGGCGGGCCCACTGCTGGGCCCAGCTGGCCCACTCTGGATGCGCCCACGCAGCAAACCAACTGA
Protein Sequence: MASEYDNTSLNYICVGCLSVDRKLSTIYDAEYKRIFEDILDSMDQVKKELLLCWECTAIVRSVIRFKKQVRTAHDCLVRYMVCGTTHIESLSMLTSTICNTTDNYYNDSSNDDKSTIDDKTDACFNYGINFLSSKVTSDLSGADLGLQNTSFNADVGIPKEQETQPVFVKIEDSDFDFVEHLYEDENVTLEDKAEIEPKPNNSEVPGKKSKSKKKKRAKVKYDASDDEPLKPRKKERKKKREDTGTDDGSVKKRRSKKEKAAGVVTNSRVHRNLEQLNVAEGQIEMVVLSWEEVEAERQKALSSVVFTRHEYRCYDCALGFNHRFKLENHMNKHSPSAGPAECPVCRVRCRDDHALVAHKRRHRVRWRCVECGEASSRAAVAADHAARAHGAAPTHTCKQCGLTHQSLAKLRNHMKNHAERQKCELCGKTFRDRTSLRTHLFIHRGEKEYSCPHCAKKFLFKKAMEVHLVTHSAPAQLYCLECDMTFKNRMSYYQHKKYNLKHIDPAKLKYECPLCDKKFLKAVRLEEHNFAVHLKVTPIRCTMPDCDFACSSRPVLRTHIRMIHRNHRAVRNHVCDTCGKAYTTKKTLEGHMRSHTGERPFACTLCPSTFAYEAALYNHAKLVHRKGKVGRRGGPTAGPSWPTLDAPTQQTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342595; iTF_00156617; iTF_00325799; iTF_01135218; iTF_01136213;
90% Identity: iTF_00156617;
80% Identity: -