Pcor025114.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- zfy1
- Assembly
- GCA_949127965.1
- Location
- OX421878.1:4912862-4930338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0047 0.3 12.3 3.6 1 23 307 329 307 329 0.98 2 11 0.06 3.9 8.8 2.0 2 23 337 358 337 358 0.97 3 11 6.9 4.5e+02 2.3 0.0 2 14 363 375 362 385 0.74 4 11 1.1 69 4.8 4.8 1 23 391 413 391 413 0.97 5 11 5.9e-06 0.00038 21.4 1.5 2 23 418 439 417 439 0.96 6 11 0.0079 0.51 11.5 1.8 1 23 445 467 445 467 0.97 7 11 0.047 3 9.1 1.6 2 21 474 493 473 498 0.92 8 11 0.15 9.6 7.5 0.6 1 14 506 519 506 529 0.77 9 11 0.014 0.89 10.8 0.7 2 23 536 560 535 560 0.95 10 11 2.6e-06 0.00017 22.5 1.5 1 23 569 591 569 591 0.98 11 11 0.14 8.9 7.6 0.1 1 23 597 620 597 620 0.94
Sequence Information
- Coding Sequence
- ATGACGACAATGACTTTCCAATACAACAATACTTCGCTAAATTACATTTGCGTGGGCTGTTTAAGCGCAGATCGAAAgttatgtacaatttatgatgcgGAATACACACGTATTTTTGATGAGCTTTTAGACTCCATGGACCAAGTTAAACTAGAATTACTGCTGTGTTGGGAGTGCACCGCCATAGTGAGATCTGTGATACGGTTCAAGAAGCAAGTTAGGACGGCTCATGATTGCTTGGTCAGATACAAGgtcTGCCGAACCCCTCACACAGCTTCCCTATCAACATTAACAACTACAACATGTACCACATCTACATATTACTGTCACGATTCTGTCAACGATGACAAATCATCTGTTGACCACAAAACAACGGACACTTTAGCCTCCGAAGTTAATGATATTTCTAAAGTTCAAACTGATTCTAGTTTTCCACAAAGTATCTCTGTTAATCCAGATAGTGGTAGAGAGAATGAAACTCAGCCGTTCTTTGTTAAAATTGAAGAAAATGACCTTGATTTTGATGAACATCAGTATGAAGATGAAAATGTGATTGAGGATAAAGAAAGTGAATCTAAAACCGACAATCCTCAAGTAACgagtaaaaaatcaaaaagcaaGAAAAAGAAACGGAAAAAGGTTAAATACGACGCTTCAGACGACGAACCTCTCAAACCGAGCAAGAAAGAAACAAGGATGACAAAGAAAGAGGATATAGGCACAGATGACAGCACAGTAAAGAAACGTCGCAGCAAGAAAGAAAAAGCAGCAGGCGTGGTCACCAACTCGAGGGTCTACAGGAACCTGGAGCAGCTGAACGTGGCTGAGGGGCAGATCGAGATGGTGGTGCTCAGCTGGGAGGAGgTAGAAGAGGAGCGGCAGAAGGCGTTGTCGAGCGTCGTGTTCACTCGCCACGAGTACAGATGTTACGACTGCGTACTGGGGTTCAACCACCGGTTCAAGCTCGAAAACCATATGACTAAACATTCACAGTCGGCGGGCCCGGCGGAGTGTCCCGTGTGTCGCGTGCGATGTCGCGACGACCACGCGCTGGTCGCCCACAAGCGGCGACATCGCGTACGatggcgctgcgTGGAGTGCGGTGAGTCGGCGTCGCGCGCGGCCGTTGCGGCTGAccatgcggcgcgcgcgcacggcgcTGCGCCCACGCACACGTGCAGGCAGTGCGGCCTCACGCACCAGTCTTTGGCGAAACTTCGGAATCATATGAAAAATCACGCGGAGAGGCAGAAATGCGAGCTTTGCGGGAAAACGTTCAGAGATAGAACTTCGCTGCGGACTCATCTGTTTATACATAGAGGCGAGAAGGAGTATACTTGCCCGCATTGTGAGAAGAAGTTCCTCTTCAAGAAGGCCATGGAGGTGCATCTGGTCACGCACTCTGCGCCTGCGCAGCTCTACTGCTTAGAGTGTGACATGACGTTCAAAAACCGGATGTCGTACTACCAACACAAGAAATACAACTTGAAGCATATCGACCCTGCTAAATTGAAGTATGAATGCCACTTGTGCGATAAGAAATTCCTGAAAGCCGTCCGTCTGGAGGAGCACAACTTCGCGGTGCATCTCAAAGTGACTCCCATACGCTGCACCATGCAAGACTGCGATTTCGCGTGTTCGTCGCGGCCGGTGCTGCGCACGCACATCCGCATGATCCACCGGAACCTGCGCGCCGTCAGGAACCACGTCTGCGACACCTGCGGGAAGGCCTACACGACTAAGAAGACTCTGGAAGGCCATATGCGGTCCCACACGGGCGAGCGACCGTTCGTCTGTGCGCTGTGTCCATCCACTTTTGCGTACGAGGCGGCACTCTACAACCACTCCAAACTCAAGCACCGCAAAGGGAAGGTTGGGCGCCGCGGCGGGCCCACTGCTGGCTCCAGCTGGCCCGCTCTggatgcgccggcgccgctcgcACACCAGGACTGA
- Protein Sequence
- MTTMTFQYNNTSLNYICVGCLSADRKLCTIYDAEYTRIFDELLDSMDQVKLELLLCWECTAIVRSVIRFKKQVRTAHDCLVRYKVCRTPHTASLSTLTTTTCTTSTYYCHDSVNDDKSSVDHKTTDTLASEVNDISKVQTDSSFPQSISVNPDSGRENETQPFFVKIEENDLDFDEHQYEDENVIEDKESESKTDNPQVTSKKSKSKKKKRKKVKYDASDDEPLKPSKKETRMTKKEDIGTDDSTVKKRRSKKEKAAGVVTNSRVYRNLEQLNVAEGQIEMVVLSWEEVEEERQKALSSVVFTRHEYRCYDCVLGFNHRFKLENHMTKHSQSAGPAECPVCRVRCRDDHALVAHKRRHRVRWRCVECGESASRAAVAADHAARAHGAAPTHTCRQCGLTHQSLAKLRNHMKNHAERQKCELCGKTFRDRTSLRTHLFIHRGEKEYTCPHCEKKFLFKKAMEVHLVTHSAPAQLYCLECDMTFKNRMSYYQHKKYNLKHIDPAKLKYECHLCDKKFLKAVRLEEHNFAVHLKVTPIRCTMQDCDFACSSRPVLRTHIRMIHRNLRAVRNHVCDTCGKAYTTKKTLEGHMRSHTGERPFVCALCPSTFAYEAALYNHSKLKHRKGKVGRRGGPTAGSSWPALDAPAPLAHQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155676;
- 90% Identity
- iTF_01136213;
- 80% Identity
- -