Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000003.1:3152792-3173685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 0.12 13.8 3.5 1 23 310 332 310 332 0.99

2 11 0.012 0.97 11.0 3.6 2 23 340 361 340 361 0.97

3 11 5.1 4.1e+02 2.7 0.0 2 17 366 381 365 388 0.74

4 11 0.23 18 6.9 4.0 1 23 394 416 394 416 0.97

5 11 5.9e-06 0.00047 21.4 1.5 2 23 421 442 420 442 0.96

6 11 0.0014 0.11 13.9 1.5 1 23 448 470 448 470 0.97

7 11 0.047 3.8 9.1 1.6 2 21 477 496 476 501 0.92

8 11 0.12 9.7 7.8 0.2 1 14 509 522 509 532 0.77

9 11 0.014 1.1 10.8 0.7 2 23 539 563 538 563 0.95

10 11 2.6e-06 0.00021 22.5 1.5 1 23 572 594 572 594 0.98

11 11 0.062 5 8.7 0.0 1 23 600 623 600 623 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	0.12	13.8	3.5	1	23	310	332	310	332	0.99
2	11	0.012	0.97	11.0	3.6	2	23	340	361	340	361	0.97
3	11	5.1	4.1e+02	2.7	0.0	2	17	366	381	365	388	0.74
4	11	0.23	18	6.9	4.0	1	23	394	416	394	416	0.97
5	11	5.9e-06	0.00047	21.4	1.5	2	23	421	442	420	442	0.96
6	11	0.0014	0.11	13.9	1.5	1	23	448	470	448	470	0.97
7	11	0.047	3.8	9.1	1.6	2	21	477	496	476	501	0.92
8	11	0.12	9.7	7.8	0.2	1	14	509	522	509	532	0.77
9	11	0.014	1.1	10.8	0.7	2	23	539	563	538	563	0.95
10	11	2.6e-06	0.00021	22.5	1.5	1	23	572	594	572	594	0.98
11	11	0.062	5	8.7	0.0	1	23	600	623	600	623	0.94

Sequence Information

Coding Sequence: ATGGcttcagaatacaataacactTCGCTTAATTACGTTTGCTTGGGTTGTTTAAGTTCAGATCGAAAGTTAAGCACAATTTATGATGCAGAATACATACGCATTTTTGAGGAGTTTTTGGAGTCCATGGAACAAGTAAAAAAAGAATTGCTGCTGTGTTGGGAGTGCACTGCTGTAATTAGATCTGTGATACGGTTCAAGAAGCAAGTCAGGACGGCTCATGATCACCTGGTCTGCCGAACAACCCATATAGAGTCTCTATCAACATTAACGACTACCATCTGCAATACAATCCACAATTACTATAATGATGATTTTGTCAATGATGACAAATCATCCATTGATGATCACAAAACAGACAGTTTTACATATGAAATGGATTTCATAAATTCTAAAGTGACTTCAGATCCGTCCTGTGCTGATTTAggtttacaaaatacgtctttaAATCTTGATGCTGGTAGAGTTTCTACGGAACAAGAGACTCAGCCGGTGTTTGTTAAGATTGAAGACAGTGATTTTGATTTCGGTGAACATTTGTATGAAGATGAAAATGTGGCTGTCGAGGATAAACAAGTTGAAGTTGAACATAAAACTGATGATACTCAGAAACCAAGTAAAAAGGCAAAaagcaagaaaaagaaaaagtcaaAGGTTAAATACGACGCGTCTGATGACGAGCCCCTGAAACCTCGCAAGAAAGAACGGAAGATAAAGAAGGATGATACGGGTACTGATGGAAGCTTAGTAAAGAAACGTCGCAAGAAAGAGAAGGCTGCGGGCGTCGTCACCAACTCGAGGGTCCACAGGAATCTGGAGCAACTGAATGTGGCCGAGGGACAGATACAAATGGTGGTGCTGAGCTGGGAAGAGGTAGAAGCGGAGCGGCAAAAGGCGCTCTCAAGTGTTGTGTTCACTCGCCATGAGTACAGGTGCTACGACTGCGTTCTCGGGTTCAACCACCGGTTCAAGCTGGAAAATCACATGAATAAACATTCACCGTCCGCAGGCCCGGCGGAGTGTCCCGTGTGTCACGTGCGATGTCGCGACGAGCACGCACTCGTCGCGCATAAGCGGCGACATCGAGTCAGATGGCGCTGCGCGGAGTGTGGCGAGGCGTCGTCCCGCGCGGCGGTGGCGGCCGAccacgcggcgcgcgcgcacggcgCCGCACCCACGCACGTCTGCAAGCAGTGCGGCCTCACGCACCAGTCTTTGGCGAAACTTCGGAATCATATGAAAAATCACGCGGAAAGGCAGAAATGTGAACTTTGCGGCAAAACATTCAGGGACAGGACCTCACTGCGCACACACTTGTTTATACACCGGGGCGAGAAGGAGTACTCGTGCCCGCACTGCGGCAAGAAGTTCCTCTTCAAGAAGGCCATGGAGGTGCATTTGGTCACGCACTCGGCGCCTGCGCAACTTTACTGTCTAGAATGCGACATGACGTTCAAAAACCGGATGTCTTACTACCAACACAAGAAGTATAACCTAAAGCACATCGACCCGGCCAAGTTGAAGTACGAGTGTCCCCTGTGCGACAAGAAGTTCCTGAAAGCGGTTCGTTTGGAGGAGCACAACTTTGCGGTGCACCTCAAGGTCACGCCGATACGTTGTACCATGCAGGACTGCGATTTCgcGTGTTCGTCGCGGCCCGTGCTGCGCACGCACATCCGTATGATCCATCGCAACGTGCGCGCCGTCCGGAACCACGTGTGCGACACCTGCGGGAAAGCTTACACGACAAAGAAGACTCTGGAAGGTCACATGAGGTCCCATACGGGCGAGCGTCCTTTCGCTTGCTCGCTCTGCCCCTCCACATTCGCGTACGAGGCCGCGCTGTATAACCACGCCAAGCTCGTACACCGCAAGGGGAAGGTGGGGCGGCGAGGCGTGCCCACTGCTGGGGCTAGCTGGCCCACTCTGGAAACGCCCACGCAGCAAACCGCCTGA
Protein Sequence: MASEYNNTSLNYVCLGCLSSDRKLSTIYDAEYIRIFEEFLESMEQVKKELLLCWECTAVIRSVIRFKKQVRTAHDHLVCRTTHIESLSTLTTTICNTIHNYYNDDFVNDDKSSIDDHKTDSFTYEMDFINSKVTSDPSCADLGLQNTSLNLDAGRVSTEQETQPVFVKIEDSDFDFGEHLYEDENVAVEDKQVEVEHKTDDTQKPSKKAKSKKKKKSKVKYDASDDEPLKPRKKERKIKKDDTGTDGSLVKKRRKKEKAAGVVTNSRVHRNLEQLNVAEGQIQMVVLSWEEVEAERQKALSSVVFTRHEYRCYDCVLGFNHRFKLENHMNKHSPSAGPAECPVCHVRCRDEHALVAHKRRHRVRWRCAECGEASSRAAVAADHAARAHGAAPTHVCKQCGLTHQSLAKLRNHMKNHAERQKCELCGKTFRDRTSLRTHLFIHRGEKEYSCPHCGKKFLFKKAMEVHLVTHSAPAQLYCLECDMTFKNRMSYYQHKKYNLKHIDPAKLKYECPLCDKKFLKAVRLEEHNFAVHLKVTPIRCTMQDCDFACSSRPVLRTHIRMIHRNVRAVRNHVCDTCGKAYTTKKTLEGHMRSHTGERPFACSLCPSTFAYEAALYNHAKLVHRKGKVGRRGVPTAGASWPTLETPTQQTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155676;
90% Identity: -
80% Identity: -