Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387371.1:8587787-8613224[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 0.11 13.8 3.5 1 23 313 335 313 335 0.99

2 11 0.059 4.3 8.8 2.0 2 23 343 364 343 364 0.97

3 11 6.2 4.5e+02 2.4 0.0 2 17 369 384 368 391 0.74

4 11 0.31 22 6.5 4.9 1 23 397 419 397 419 0.97

5 11 5.8e-06 0.00042 21.4 1.5 2 23 424 445 423 445 0.96

6 11 0.047 3.4 9.1 1.4 1 23 451 473 451 473 0.97

7 11 0.046 3.4 9.1 1.6 2 21 480 499 479 504 0.92

8 11 0.12 8.7 7.8 0.2 1 14 512 525 512 535 0.77

9 11 0.01 0.73 11.2 0.4 2 23 542 566 541 566 0.94

10 11 2.6e-06 0.00019 22.5 1.5 1 23 575 597 575 597 0.98

11 11 0.051 3.7 9.0 0.1 1 23 603 626 603 626 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	0.11	13.8	3.5	1	23	313	335	313	335	0.99
2	11	0.059	4.3	8.8	2.0	2	23	343	364	343	364	0.97
3	11	6.2	4.5e+02	2.4	0.0	2	17	369	384	368	391	0.74
4	11	0.31	22	6.5	4.9	1	23	397	419	397	419	0.97
5	11	5.8e-06	0.00042	21.4	1.5	2	23	424	445	423	445	0.96
6	11	0.047	3.4	9.1	1.4	1	23	451	473	451	473	0.97
7	11	0.046	3.4	9.1	1.6	2	21	480	499	479	504	0.92
8	11	0.12	8.7	7.8	0.2	1	14	512	525	512	535	0.77
9	11	0.01	0.73	11.2	0.4	2	23	542	566	541	566	0.94
10	11	2.6e-06	0.00019	22.5	1.5	1	23	575	597	575	597	0.98
11	11	0.051	3.7	9.0	0.1	1	23	603	626	603	626	0.94

Sequence Information

Coding Sequence: ATGGCCTCAGAATACGATATTACTTCGCTAAATTACATTTGCGTGGGCTGTCTAAGTGTAGATCGTAAGTTAAGTACAATTTATGATGCAGAATACAAACGTATTTTTGAGGAGATTTTGGACTCCATGGACCAAGTAAAGAAAGAATTGCTGCTGTGTTGGGAGTGTACCGCTATAGTTAGGTCTGTGATACGGTTCAGGAAGCAAGTTAGGACGGCTCATGATTGCTTGGTCGGATATATGGTCTGCGGAACAACCCACATAGAGTCTCTATCAACGTTGACAAGCACAATCTGTAACACAACTGACAATTACTATAACGATTCATCCAATGAAGACAAATCATCGATTGATGACAAAACAGATGCTTGTTTCAATTACGGAATCAATTTCCTAAATTCTAAAGTGACTTGTGATCTGTCCAGTGCTGACTTAGGTTTACATGATACATCTTTAAATACAGATGTTGGTATACCTTATAAAGAACAAGAGACTCAGCCTGTCTTTGTTAAAATTGAAGACAGTGATTTTGATTTTGGTGAACATTTGTATGAAGACGAAAATGTAACGGTTGAGGATAAAACAGAGATAGAACCAAAGCCCAATAATGCTGAGGTACCAAGTAAAAAGGCAAAAAGCAAGAAAAAGAAGAGGAGGAAGGTTAAATACGACGCGTCTGATGACGAGCCTCTGAAGCCGCGGAAGGAAGAACGGAAGAAAAAGAAAGAAGATACGGGTACAGATGATGGGTCAGTGAAGAAACGCCGCAGCAAGAAGGAGAAGGCGGCGGGCGTCGTCACCAACTCGAGGGTCAACAGGAACCTGGAGCAGCTCAACGTGGCGGAAGGCCAGATTGAAATGGTGGTGCTGAGCTGGGAAGAGGTAGAAGCTGAGCGTCAGAAAGCATTGTCGAGCGTCGTGTTTACGCGGCACGAATACAGGTGCTACGACTGCGTGCTAGGGTTCAACCACCGGTTCAAGCTGGAGAACCACATGAATAAACATTCACCGTCCGCAGGTCCGGCGGAGTGTCCCGTGTGCCGCGTGCGGTGCCGCGACGACCACGCGCTCGTGGCGCACAAGCGGCGACATCGAGTGCGATGGCGTTGCGTGGAGTGCGGTGAGGCGTCGTCCCGCGCGGCCGTCGCGGCCGATCACGCTGCGCGGGCGCACGGAGCCGCCCCCACACACACATGCAAGCAGTGCGGACTCACACACCAGTCTTTGGCGAAACTACGTAATCATATGAAAAATCACGCGGAAAGGCAGAAATGTGAACTCTGCGGGAAAACGTTCAGGGATAGGACCTCACTACGAACGCACTTGTTTATACACAGAGGTGAGAAAGAGTACTCGTGTCCGCATTGCGCTAAGAAGTTCCTCTTCAAGAAGGCGATGGAGGTGCATTTGGTCACGCACTCGGCGCCGGCGCAGCTCTACTGCCTTGAATGCGACATGACGTTCAAAAACAGGATGTCCTATTACCAACATAAGAAGTACAATTTGAAGCATATCGACCCGGCGAAACTCAAGTACGAATGCCCTCTCTGTGACAAGAAGTTCCTGAAAGCGGTTCGCTTGGAAGAGCACAACTTCGCCGTCCACCTCAAAGTCACGCCGATTCGCTGCACCATGCCAGACTGCGATTTCGCGTGTTCGTCCCGCCCCGTGCTGCGCACGCACATCCGCATGATCCACCGCAACCTCCGCGCCGTCAGGAACCACGTCTGCGATACCTGTGGGAAGGCCTATACGACAAAGAAGACACTAGAAGGCCACATGCGGTCCCACACGGGGGAACGCCCATTCGCGTGTACTCTGTGTCCGTCCACTTTCGCCTACGAAGCCGCGCTCTACAACCACGCCAAGCTTGTCCACCGCAAGGGGAAGGTTGGGCGCCGAGGCGGGCCCACTGCTGGGCCCAGCTGGCCCACTCTGGATGCGCCCACGCAGCAAACCAACTGA
Protein Sequence: MASEYDITSLNYICVGCLSVDRKLSTIYDAEYKRIFEEILDSMDQVKKELLLCWECTAIVRSVIRFRKQVRTAHDCLVGYMVCGTTHIESLSTLTSTICNTTDNYYNDSSNEDKSSIDDKTDACFNYGINFLNSKVTCDLSSADLGLHDTSLNTDVGIPYKEQETQPVFVKIEDSDFDFGEHLYEDENVTVEDKTEIEPKPNNAEVPSKKAKSKKKKRRKVKYDASDDEPLKPRKEERKKKKEDTGTDDGSVKKRRSKKEKAAGVVTNSRVNRNLEQLNVAEGQIEMVVLSWEEVEAERQKALSSVVFTRHEYRCYDCVLGFNHRFKLENHMNKHSPSAGPAECPVCRVRCRDDHALVAHKRRHRVRWRCVECGEASSRAAVAADHAARAHGAAPTHTCKQCGLTHQSLAKLRNHMKNHAERQKCELCGKTFRDRTSLRTHLFIHRGEKEYSCPHCAKKFLFKKAMEVHLVTHSAPAQLYCLECDMTFKNRMSYYQHKKYNLKHIDPAKLKYECPLCDKKFLKAVRLEEHNFAVHLKVTPIRCTMPDCDFACSSRPVLRTHIRMIHRNLRAVRNHVCDTCGKAYTTKKTLEGHMRSHTGERPFACTLCPSTFAYEAALYNHAKLVHRKGKVGRRGGPTAGPSWPTLDAPTQQTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155676;
90% Identity: iTF_00155676;
80% Identity: -