Abis009752.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000034.1:1140033-1142087[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-13 2.9e-10 40.1 0.1 1 39 9 47 9 52 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGCAAACGGGCATTGTGGTCAGAAGATGATCTGATCGCAGCTGTTAGGGCAGTACAAAGAGGAACTATGAGTACTTATAAAGCTGCAGAGAGATATAAGGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAAGTTTGGGACGTAAACCTATATTAAATGATGAAGAGGAAGCTCAACTTGTGCAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGTCACCGAGAATATTGCGTCGGTTGGTGTATAAATATTGcgagcaaaataatataaagcacAATTTTAATGATGAGGGAAAACGCGCAGGCAAAGACTGGTTCAAAGCGTTCATGAAAAGACACCCTGAAATATCCGTAAGAAAAGCACAATTCATGAACCCAGCTAGAGCCCAAAAgctcaataaatttattgttaatgaCCATTTTAAAAAACTGAGAGATATCTACGATAAATTTGACTTATATGATCATCCCgagaaaatttataatatggatGAGAAAGGATGCCGTCTCACTATCCACCACCAGCAAAGTGTTTTGGCCAAAAAAGGGGCTAAAAGGGTTCATTTGCAGTCTTCTGAACATGCTGAAAGCGTTACCATCGCAGGATGTGTTAATGCTCTTGGCACAGCCATACCACCCATGGTCATATTTAAGGGAAAACGTTTGAAACCAGAGTTGTACGATAATTTGCCTCAAGGATCTTTAGTAGAAAAATCAGCAAAGGGGTATATGACCAATgaacttttcaaaatatttttaaaacacttgTCTAGATACAAAAGCCAGGGACCATGCCTTTTGATATTTGACGGAGCAGCATGTCATTTAGATCTTTCCATAGTCGATATATCCGATTCACTTGGCATTAATTTGTACTGCCTACCTTCAAACACAACGCATGAATTACAGCCCCTAGACAAAGCCGTATATCGATCATTCGAGCACCACTGGGATGCTGAATTGTTATCATTTTTGGACCAAAACAGAGACAAAAAACTCACTAAAGCACGCTTTAATATCATTCTTTCAAGCGTTTGGTCTAAATGTATGACACACAACAATATCACGAGTGGCTTTAGAGCGACTGGCTTGTATCCCTTCAACTCACAGGCCATACCAGAAACAGCTTTTGCCCCTTCCATTTTAACGGAAGCTCCTGCACCAGATGGTGCACAAGAAAACGCACCAGCTCTCGAACATCCTCATGCACAAGCTTCAGAATCCGGAGATACAACACCGTCTATTTTATCGGAAGCCTCAACACCTGATCGTGATCAAGAAAATATACCACCTATTAATAATGATCAACAGAAGAGTCCACAATCTGCTGCTAGTTCACCATCAATTTTGACACTGATTCCAATAACCGATGTCTCGCTTGGAAATATTTCACCTGTTGAATGTCTTCTACCAGCGACTGCAGAACAAACTAAGCAATCACCAGCTATACCATCAACATCCACAGGTCAGGTCTCAAGAGAACCAATCGCGCAACGCAGCTATTATCGCACAGTTTATGAAACAAGCTCTAGTTCAGATGAATCTGATGATTTACCACTCAGTCGGTTGAAAAGAAATGATTTTTATGATCTTCTGCCTACGCCTGTTAAAGTTCAAACATGCACACCGACTGTTAGACGAAAAGCCATTAATTACCGAGGTACTCCAGTCACAAAAGATctatttgataaatataatcaagataaaataaatagtaaagaaGTGAAAGGtaacaaaagagaaaaaaataaacaagacaaaaactttacaaatagaaaagaaaaaacgaagtTTAAAAAGACTTTATATCCTAAGAAAGCTAAAATCGTATCTGCAAAAAAGTCTACTACCGTCAAAGGTAAATCACAAAGACAAGTGAGTTGGTACTGTCATGCCTGCAAAGAAGATAGAATGGATGATGCAATGAGGCAATGCTCGCGATGCTCCAAGTGGTACCACGAAGAGTGTGTCGGTTTGACTGCAGAAGATACTGATGACTTTCAATGTCCTGATGGATGCGAATAA
- Protein Sequence
- MPRKRALWSEDDLIAAVRAVQRGTMSTYKAAERYKVPRRTIRNHLQSGSLKKSLGRKPILNDEEEAQLVQRIIRYSEMGLPVSPRILRRLVYKYCEQNNIKHNFNDEGKRAGKDWFKAFMKRHPEISVRKAQFMNPARAQKLNKFIVNDHFKKLRDIYDKFDLYDHPEKIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPQGSLVEKSAKGYMTNELFKIFLKHLSRYKSQGPCLLIFDGAACHLDLSIVDISDSLGINLYCLPSNTTHELQPLDKAVYRSFEHHWDAELLSFLDQNRDKKLTKARFNIILSSVWSKCMTHNNITSGFRATGLYPFNSQAIPETAFAPSILTEAPAPDGAQENAPALEHPHAQASESGDTTPSILSEASTPDRDQENIPPINNDQQKSPQSAASSPSILTLIPITDVSLGNISPVECLLPATAEQTKQSPAIPSTSTGQVSREPIAQRSYYRTVYETSSSSDESDDLPLSRLKRNDFYDLLPTPVKVQTCTPTVRRKAINYRGTPVTKDLFDKYNQDKINSKEVKGNKREKNKQDKNFTNRKEKTKFKKTLYPKKAKIVSAKKSTTVKGKSQRQVSWYCHACKEDRMDDAMRQCSRCSKWYHEECVGLTAEDTDDFQCPDGCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924530;
- 90% Identity
- iTF_01246757; iTF_01246758; iTF_01246756; iTF_00924530; iTF_00114865; iTF_00722970; iTF_00276235; iTF_00159756; iTF_00159755; iTF_00157142; iTF_00991685; iTF_00722971; iTF_01154944;
- 80% Identity
- -