Acar021585.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989966.1:4403518-4405590[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-12 8.4e-10 38.6 0.1 1 39 9 47 9 53 0.92 2 2 2.8 1.9e+03 -1.0 0.0 8 18 493 503 491 504 0.93
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACGGGCATTGTGGTCAGAAGACGATCTGATCGCAGCTGTTAGAGCAGTACAAAGAGGAACTTTGAGTACTTATAAGGCTGCAGAGAGATATAAGATTCCTAGAAGAACAATCAGAAATCACATACAGTCTGGCAGTTTAAAGAAACGTTTGGGACGTAAACCTATATTAAATGTTGAAGAGGAAGCTCAACTTGTGGAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGACAGCAAGAATATTGCGTCGATTGGTGTATAAATATTGTGAGCAAAATAATATAAAACACAATTTTAATGATGAGGGCAAACGCGCAGGCAAAGACTGGTTCAAAGCGTTCATGAAAAGACACCATGAAATATCCGTAAGAAAAGCGCAATTCATGAACCCAGCTAGAGCCCAAAAACTAAATAAATTTATTGTTGATGACCATTTTAAAAAACTGAGAGATATCTACGATAAATTTGACTTATATGATCACCCCGAGAAAATTTATAATATGGATGAGAAAGGATGCCGTCTTACTATCCACCACCAGCAAAGTGTTTTGGCCAAAAAAGGGGCTAAAAGGGTTCATTTGCAGTCTTCTGAACATGCTGAAAGCGTTACCATCGCAGGATGTGTTAATGCTCTGGGCACAGCCATACCACCTATGGTCATATTTAAAGGGAAACGTTTGAGACCAGAATTGTACGATAATTTGCCTCAAGGATCTTTAGTAGAAAAGTCAGCAAAGGGGTATATGACCAATGAACTTTTCAAAATATTTTTAAAACATTTGTTTAGATACAAAATCCAGGGACCATGCCTTTTGATATTTGACGGAGCAGCATGTCATTTAGATCTTTCCATAGTTGATTTATCCGATTCACTTGGCATTAACTTGTACTGCCTACCTTCAAACACAACCCATGAATTACAGCCCCTCGACAAAGCCGTATATCGATCATTCGAGCACCACTGGGATGCTGAATTGTTATCATTTTTGGACCAAAACAGAGACAAAAAACTCACTAAAGCACGCTTTAATATAATTCTTTCAAGCGTTTGGTCTAAATGTATGACACACGGCAATATCACGAGTGGCTTTAAAGCGACTGGTTTGTATCCCTTCAACCCACAGGCCATACCAGAAACAGCTTTTGCTCCTTCCATTTTAACGGAAGCTCCTGCACCAGATGGTGCACAAGAAAACGCATTAGCTCTCGAACATCCTCATGCACAAGCTTCAGAATCCGGAGATACAACACCGTCTATTTTATCGGAAGCCTCAACGCCTGATCGTAATCAAGAAAATATACCACCTATTAATAGTGATCAACAGAATTGTTCAGAATCTGCAGTAGCAATACTAGTAAGTTCACCATCAATTTTGACACCGATTCCAATACCCGATGTCTCGCTTTTACCTGTTGATTGTCTTCGACCAGCGACTCCAGAACAAACTATGCAATCACCAGCTATAGCATCAATATCCACAGGTCAGGTCTCAAGAGAATCAATCGTGCAACGCAGCTATTATCGCACAGTTTATGGAAGAAGCTCTAGTTCAGATGAATCTGATGATTTACCACTTAGTCGGTTGAAAAGAAATGATTTTTACGATCTTCTACCTACGCCTGTTAAAATTAAAACATGCACACCGACTGTTAGACGAAAAGCCATTAATTATCGAGGTACTCCAGTCACAAAGGATCTATTTGATAAATATAAACAAGAGAAAATAAAAAGTAAAGAAGTGAAAGGTAACAAAAGAAAGAAAAATAAACAAGACGAAAACTTTACTCATGTTAAAACAGGTAGAAATGAAAAAACGAAGTTTAAAAAGACTTTAAATCCTAAGAAAGCTAAAATCATATCTGCAAAAAAGTCTACTACCGTTAAAAGTAAATCACAAAAACAAGTGAGTTGGTATTGTCATGCCTGTAAAGAAGATAGAATGGACGATGCAATGAGGCAATGCTCACGATGCTCCAAGTGGTACCACGAAGAGTGTGTCGGTTTGACTGCAGAAGATACTGATGACTTTCAATGTCCTGTTGGATGCGAATGA
- Protein Sequence
- MPPKRALWSEDDLIAAVRAVQRGTLSTYKAAERYKIPRRTIRNHIQSGSLKKRLGRKPILNVEEEAQLVERIIRYSEMGLPVTARILRRLVYKYCEQNNIKHNFNDEGKRAGKDWFKAFMKRHHEISVRKAQFMNPARAQKLNKFIVDDHFKKLRDIYDKFDLYDHPEKIYNMDEKGCRLTIHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLRPELYDNLPQGSLVEKSAKGYMTNELFKIFLKHLFRYKIQGPCLLIFDGAACHLDLSIVDLSDSLGINLYCLPSNTTHELQPLDKAVYRSFEHHWDAELLSFLDQNRDKKLTKARFNIILSSVWSKCMTHGNITSGFKATGLYPFNPQAIPETAFAPSILTEAPAPDGAQENALALEHPHAQASESGDTTPSILSEASTPDRNQENIPPINSDQQNCSESAVAILVSSPSILTPIPIPDVSLLPVDCLRPATPEQTMQSPAIASISTGQVSRESIVQRSYYRTVYGRSSSSDESDDLPLSRLKRNDFYDLLPTPVKIKTCTPTVRRKAINYRGTPVTKDLFDKYKQEKIKSKEVKGNKRKKNKQDENFTHVKTGRNEKTKFKKTLNPKKAKIISAKKSTTVKSKSQKQVSWYCHACKEDRMDDAMRQCSRCSKWYHEECVGLTAEDTDDFQCPVGCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924530;
- 90% Identity
- iTF_00146314;
- 80% Identity
- -