Basic Information

Insect: Polymixis flavicincta
Gene Symbol: -
Assembly: GCA_949987655.1
Location: OX465196.1:15733511-15735577[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.3e-11 1e-08 36.1 0.1 1 39 9 47 9 52 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.3e-11	1e-08	36.1	0.1	1	39	9	47	9	52	0.94

Sequence Information

Coding Sequence: ATGCCTCCCAAACGGGCATTGTGGTCAGAAGACGATCTGATCGCAGCTGTTAGAGCAGTACAAAGAGGAATTTTGAGTACGTATAAGGCTGCAGAGAGATATAAGGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAAGTTTGGGACGTAAACCTATATTAAATGATGAAGAGGAAGCTCAACTTGTGCAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGACACCAAGAATATTGCGTCGGTTGGTGTATAAATATTgtgagcaaaataatattaaacacaATTTTAATGATGAGGACAAACGCGCAGGCAAAGACTGGTTCAAAGCGTTCATGAAAAGACACCATGAAATATCCGTAAGAAAAGCGCAATTCATGAACCCAGCTAGAGCCCAAAagctaaataaatttattgttgATGACCATTTTAAACAACTGAGAGATATCTACGATAAATTTGACTTATATGATCATCCCGAGAAAATTTATAATATGGATGAGAAAGGATGCCGTCTCACAACCCACCACCAGCAAAGTGTTTTGGCCAAAAAAGGGGCTAAAAGGGTTCATTTGCAGTCTTCTGAACATGCTGAAAGCGTTACCATCGCAGGATGTGTTAATGCTCTTGGCACAGCCATACCACCTATGGTCATATTTAAGGGAAAACGTTTGAAACCAGAATTGTACGATAATTTGCCTCAAGGATCTTTAGTAGAAAAATCTGCAAAAGGGTATATGACCAATGaacttttcaaaatatttttaaaacacttGTCTAGATACAAAAGCCAGGGACCATGCCTTTTGATATTTGACGGAGCAGCATGTCATTTAGATCTTTCCATAGTTGATATATCCGATTCACTTGGCATTAATTTGTACTGCCTACCTTCAAACACAACCCATGAATTGCAGCCCCTCGACAAAGCCGTATATCGATCATTCGAGCACCACTGGGATGCTGAATTGTTATCATTTTTGGACCAAAACAGAGACAAAAAACTCACTAAAGCACGCTTTAATATCATTCTTTCAAGCGTTTGGTCTAAATGTATGACACACAGCAATATCACGAGTGGCTTTAAAGCGACTGGCTTGTATCCATTCAATCCACAGGCCATACCAGAAACAGCTTTTGCCCCTTCCATTTTAACGGAAGCTCCTGCACCAGATGGTGCACAAGAAAACGCAACGGCTCTCGAACATCCTCATGCACAAGCTTCAGAATCCGGAGATACAACACCGTCTATTTTATCGGAAGCCTCAACGCCTGATCGTGATCAAGAAAATATACCACCTATTAATGGTGATCAACAGAAGAGTTCAGAATCTGCTACTAGTTCACCATCAATTTTTACACCGATTCCAATACCCGATGTCTCGCTTGGAAATATTTCACCTGTTGATTGTCTTCGACCAGCGACTCCAGAACAAACTAAGCAATCACCAGTTATAGCATCAACGTCCACAGGTCAGGTCTCAAGAGAATCAATCGTGCAACGCAGCTATTATCGTACAGTTTATAGAACAAGCTCCAGTTCAGATGAATCTGATGATTTACCACTCAGTCGGTTGAAAAGAAATGATTTTTATGATCTTCTGCCAACGCCTGTTAAAGTTCAAACATGCACACCGACTGTTAGACGAAAAGCCATTAATTATCGAGGTACTCCAGTCACAAAAGATCTATTTGATAAATATAAtcaagagaaaataaatattaaagaagtgaaaggtaacaaaaaaaataaaaataaacaagacgAAAACTTTACTGATGTTAAAACAGGtagaaaagaaaaaacgaaGTTTAAAAAGACTTTAAATTCTAAGAAAGCTAAAATCGTATCTAAAAAAAAGTCTACTACCGTCAAAGGTAAATCACAAAAACAAGGGAGTTGGTACTGTCATGCCTGCAAAGAAGATAGAATGGACGATGCAATGAGGCAATGCTCGCGATGCTCCAAGTGGTACCACGAAGAGTGTGTCGGTTTAACTGCAGAAGATACTGATGACTTTCAATGTCCTGGTGGATGCGAATAA
Protein Sequence: MPPKRALWSEDDLIAAVRAVQRGILSTYKAAERYKVPRRTIRNHLQSGSLKKSLGRKPILNDEEEAQLVQRIIRYSEMGLPVTPRILRRLVYKYCEQNNIKHNFNDEDKRAGKDWFKAFMKRHHEISVRKAQFMNPARAQKLNKFIVDDHFKQLRDIYDKFDLYDHPEKIYNMDEKGCRLTTHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPQGSLVEKSAKGYMTNELFKIFLKHLSRYKSQGPCLLIFDGAACHLDLSIVDISDSLGINLYCLPSNTTHELQPLDKAVYRSFEHHWDAELLSFLDQNRDKKLTKARFNIILSSVWSKCMTHSNITSGFKATGLYPFNPQAIPETAFAPSILTEAPAPDGAQENATALEHPHAQASESGDTTPSILSEASTPDRDQENIPPINGDQQKSSESATSSPSIFTPIPIPDVSLGNISPVDCLRPATPEQTKQSPVIASTSTGQVSRESIVQRSYYRTVYRTSSSSDESDDLPLSRLKRNDFYDLLPTPVKVQTCTPTVRRKAINYRGTPVTKDLFDKYNQEKINIKEVKGNKKNKNKQDENFTDVKTGRKEKTKFKKTLNSKKAKIVSKKKSTTVKGKSQKQGSWYCHACKEDRMDDAMRQCSRCSKWYHEECVGLTAEDTDDFQCPGGCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00924530;
90% Identity: iTF_00146314;
80% Identity: iTF_01246756;