Abak010650.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000003.1:9430030-9432809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0099 0.72 10.2 0.4 3 22 118 136 116 136 0.92 2 14 0.00042 0.03 14.6 1.7 2 20 143 161 142 164 0.95 3 14 0.0033 0.24 11.7 0.6 1 23 170 193 170 193 0.90 4 14 5.5e-06 0.00039 20.5 0.9 1 23 201 223 201 223 0.98 5 14 1.5e-05 0.0011 19.2 1.0 1 23 370 392 370 392 0.98 6 14 0.0046 0.33 11.3 0.1 2 20 402 420 401 422 0.93 7 14 0.0002 0.015 15.6 2.7 1 20 444 463 444 466 0.92 8 14 0.00026 0.019 15.2 0.5 1 23 471 494 471 494 0.95 9 14 9.3e-07 6.7e-05 22.9 0.3 1 23 500 522 500 522 0.99 10 14 0.00012 0.0087 16.3 4.2 1 23 529 551 529 551 0.99 11 14 0.00034 0.024 14.9 0.4 3 23 559 579 557 579 0.97 12 14 0.0017 0.12 12.7 0.1 1 23 585 608 585 608 0.96 13 14 0.028 2 8.8 0.2 1 23 622 644 622 644 0.97 14 14 0.034 2.4 8.6 0.0 3 23 878 898 876 898 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGAATGAGAATGAGCACTATGTTACGTATACTTTAGATAATGAAGGTATACAAGATAACATATCTCATGAAGAAATATGCGAACCAGTTGATGAGTGTGTTATACAAGAAAGTCTAACTGAAGTTACTGTCTGTGATGAAAATTCAGATATCACAGATGGTCAAGTTGCTGTAGACATCTTAACTGAAAATCCAGAAGTTGATACAGAAAATGATGTTGTATATCCTATTTACATTAAAAAGAAAATATCGCAGCAATTTACAACTGGAGATGAATCAATGGCTGTAGAAGCTTTACGTCAATTAGGTGGAATGTATCCTTGTTTCGAAGATAAGAAAGTTAATTGTACAAATTGCAATAATTCATTTAAACAAAGTGATTTAGAGAAACATCAAATCACTTGTTTATCTGATAAGCAAACTTGTAAGTTATGTGGTGAAAGATTCGAAAGAAAAATAGATTTAAATAATCACATGGTATGCCACCAAGTAGATAGACCTCACGCTTGCAGAACTTGTGGTAATTTATTTAGATCAAAAGGTAATTTACAGACCCATGTTGCTGAGGTTCACAGAGTCGAAATTGAACGACCACACAAATGCACTGTTTGTGGAGCTGATTTTCAAAGACCATCAAGTCTTTCTAATCATATGAAAATTCACAGTTACGTAGCAGGAAGAGCATTAATGCAAGGAAATAATGTAGCTACTAATATGGAAAATTTTAAAACCATGTCCACTCCACAAGAAACATCAATTCTTGCAACTACAGTCGAAACTATTCAGAATTTTGAAATACCTCAAGTGCAGTGGGCTGTGCAGACCTACAATTTTACCAATGATGAAGGCCATATAGAAGAAATTGTTGCTGAAACTGATAAAGTTGATACACTACAAGAATTTGCTGTTTTGCCAAATGGTGAAGTAGCACAGTTTGAATATACTACACAAAATGAAGTTGGAAATCAGATAGCACAAGAATATAGTTTGACTCTTAATACTTTTAATAATTCTGATACTATTTTAAAATTAGAAGCTACTGGTTACACAAATGAAAATAAAAATGCATACGTTGATATAAGTATGCAAGAAAATAAAGGACATACTTGTAGCCAATGCGGAGTAAGTTTTGCTCGTGCTTCCTCTTTGTCATTACACGAAAAAACTCATAGCAAAGCTGAATTGGGTTCTCCGGTAGAATGTGAATATTGTGATAAGCAATTCCAAGATGCGAATTTCTTAGCTACTCATCAAGCTTCTTGCGCCAAAAAATTGAAGCATAGTAATACAGAAAAAAATATATCAAATGCGAAATGGGGCAAGCATGCTTGCTCAGACTGTGGTAAAAAATTTACAACGAAACAAAAGATGTTCAGACACCAATGGATTCATAGAAAGAAAACACATTCATGCGAGATTTGTGGTACTCAATTTGAGAAACAATCTGAACTTGATGAACATAGATTGTCAGCTCATCCAGGGGATTCACCGTTTACCTGTAATGAATGTGGTAAAAGTTTTGTATCTCGTCAAGGACTTTGGGAACATGGTAGAACACACGCAGGAAGTCCAGCTTATTTTCAATGTGACACTTGCTCAAAGACTTTCTCATCTCGCCAAGGTTATTTAATACACCATCGTACCCACACTGGCGAAAGACCATATGGTTGCAAATTTTGCTGGAAAGCCTTCCGCGATGGAGGAACTTTAAGGAAGCATGAAAGAATTCATACAGGTGAACGACCTCACGTTTGTCCATTGTGTGCAAGAGCTTTTAATCAAAAAGTAGTTTTACGTGAGCATGTTAGATGGGTTCATGCTGCAGGGAAAAATGAAACTGATATTACTGAGCCACCATTTCCGTGTCCTTTATGTGAAACTTTAACACAAGATCGAGACGAACTATGTGCTCATATTGTAAAGCATTCAGATCAACTTATAGCAGAAGCTAAAGCTAAAAGTAATAACGTTACTGCCAAAACAAAACCACAGAAGAAGAAAGTTAAGACATTATCTAATAAAACAAAAAAATCCAATACAAAAGCCTCAAATGAAAGAATAATTTCATTATCAGAACAAAACGAAGCATTGCTTTCTATAACAGAACAAACAGGTGTTGCAGAGGAAGCCGAAGGTGCATACGTAGTAGTTAAAGACGAATATGATGAAGAAGTGTGTATTAAAGCATATACGCAATCTAATGATATGACTCAAACAGAATCAGGAAGTGAGTCTATCAATGTTATAGCTATTGCTAAATCATCAGATAACAAAGACGAAGAACATAATATGCATTTGATACCTTTTACTACATCAGGTGAAACTATACATCTTATCTCAAATAACAATCAAAGCAACACATTGCATTTTATATCAAAACAAAACAAAAATTTGCCTGTTTTAACAATCCCTAATCCTCAAAGTAACGAAAATTTTTCAAATGAACTTGCGCAAATAACTGAAGTGGAGACTTCAGTAGAAATAAATACAAATCACAAAAAAGATTCCGAAGAACTTCACGCAGTAACTATGTTAATCGAACCAGCGTCCATGAAAGATAGTAACCTCAAGTTTGAAGAAATAATGATCGAAGAAGAAAGTGAGAATGAGAGTGAAGAAATGATATGTGGAATTTGTGGAAGTGATTTTGAAGACAAAAATGTATTAATGGAACATGTAAAAATTCATATATAA
- Protein Sequence
- METNENEHYVTYTLDNEGIQDNISHEEICEPVDECVIQESLTEVTVCDENSDITDGQVAVDILTENPEVDTENDVVYPIYIKKKISQQFTTGDESMAVEALRQLGGMYPCFEDKKVNCTNCNNSFKQSDLEKHQITCLSDKQTCKLCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKGNLQTHVAEVHRVEIERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQGNNVATNMENFKTMSTPQETSILATTVETIQNFEIPQVQWAVQTYNFTNDEGHIEEIVAETDKVDTLQEFAVLPNGEVAQFEYTTQNEVGNQIAQEYSLTLNTFNNSDTILKLEATGYTNENKNAYVDISMQENKGHTCSQCGVSFARASSLSLHEKTHSKAELGSPVECEYCDKQFQDANFLATHQASCAKKLKHSNTEKNISNAKWGKHACSDCGKKFTTKQKMFRHQWIHRKKTHSCEICGTQFEKQSELDEHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCARAFNQKVVLREHVRWVHAAGKNETDITEPPFPCPLCETLTQDRDELCAHIVKHSDQLIAEAKAKSNNVTAKTKPQKKKVKTLSNKTKKSNTKASNERIISLSEQNEALLSITEQTGVAEEAEGAYVVVKDEYDEEVCIKAYTQSNDMTQTESGSESINVIAIAKSSDNKDEEHNMHLIPFTTSGETIHLISNNNQSNTLHFISKQNKNLPVLTIPNPQSNENFSNELAQITEVETSVEINTNHKKDSEELHAVTMLIEPASMKDSNLKFEEIMIEEESENESEEMICGICGSDFEDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01190663; iTF_01037262; iTF_01487246; iTF_01035666; iTF_01036467; iTF_00286653; iTF_01274734; iTF_00287488;
- 90% Identity
- -
- 80% Identity
- -