Ptri011006.1
Basic Information
- Insect
- Philotrypesis tridentata
- Gene Symbol
- -
- Assembly
- GCA_018906965.1
- Location
- JACCIB010000002.1:7022649-7025415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 2.2 9.9 0.6 2 20 120 137 119 139 0.92 2 14 0.0034 0.54 11.9 1.5 3 20 147 164 145 167 0.95 3 14 0.00027 0.042 15.3 0.5 1 23 173 196 173 196 0.92 4 14 6.1e-06 0.00096 20.5 0.9 1 23 202 224 202 224 0.98 5 14 1.1e-05 0.0017 19.7 1.0 1 23 363 385 363 385 0.98 6 14 0.018 2.8 9.6 0.2 2 20 395 413 394 415 0.92 7 14 0.00023 0.036 15.6 2.7 1 20 437 456 437 459 0.92 8 14 0.0022 0.35 12.4 0.5 1 23 464 487 464 487 0.95 9 14 1e-06 0.00016 22.9 0.3 1 23 493 515 493 515 0.99 10 14 0.00013 0.021 16.3 4.2 1 23 522 544 522 544 0.99 11 14 0.00037 0.059 14.9 0.4 3 23 552 572 550 572 0.97 12 14 0.0019 0.29 12.7 0.1 1 23 578 601 578 601 0.96 13 14 0.031 4.8 8.8 0.2 1 23 615 637 615 637 0.97 14 14 0.037 5.9 8.6 0.0 3 23 875 895 873 895 0.96
Sequence Information
- Coding Sequence
- ATGGAGACAAATGAAAATGAGCACTATGTTACATATACTTTAGATAATGTTAATGAAGGTATGCAAGATGATATAGCGCATGAAGAAATCTGTGAACCAGTTGTTGAATGTGTACTACCAGAAACTTTAACTGAAGTTACTGTTTGTGACGAAAATTCCGATATCACAGATGCTCAAGTTGCTGTAGATATTTTAACGGAAAATTCTGAAGTTGATGCCGAACATGGTGCAGTTGTATATCCCATTTATATTAAAAAAAAAATATCGCAACAATTCACAACTGGAGATGAATCGATGGCTGTGGAAGCTCTACGTCAATTAGGTGGAATGTATCCTTGTTTTGAAGATAAAAAAGTAACATGCACGAATTGCAATCATTCATTCAAACAAGCTGATTTAGAGAAACATCAAACTGCATGTTTATCTGATAAACAAATTTGTAAAACATGTGGTGAAAGATTTGAAAGGAAAATGGATTTAGATAATCATATGGTATGCCATCAAGTAGACAGACCTCATGCCTGCAGAACTTGTGGAAATTTGTTTAGATCAAAATCTAATTTGCAAGCTCATATAGCTGAAGTTCATCAAATTGAAAGACCTCACAAATGCACAGTTTGTGGAGCAGATTTTCAAAGACCATCAAGCCTTTCTAATCATATGAAAATTCATAGTTATGTTGCAGGAAGAGCATTGATGCAAGGAAATAATGTAGCTATATCAAATTCACAAGAGGCATCCATTCTTACAACTACAGTTGAAACTATACAAAATTTCGAAATACCTCAAGTCCAGTGGGCAGTGCAAACCTACAATTTTAGCAGTGATCAAGGTAACATCGAAGAGATTGTTAGTCAGTCTGACAAAGTTGATACATTACAAGAATTCGCTGTGTTACCAAATGGTGAAGTAGCACAGTTTGAATATACTACACAAAATGCAGTTGGAAATCAGATAACTCAAGAATATAGCTTAACTCTTAATACTTTTAATAGCTCTGACAATTTATTAAAATTAGAAGCTGCTGGTTATACCAATGATAATAAAAATGCGTATATTGATATAAGCATGCAAGAAAATAAAGGACATACTTGCAATCAATGTGGAGTAAGTTTTGCACGTGCATCCTCTTTATCCTTACATGAAAAAACTCATGCTAAAAGTGAATCAGGCTCTCCAGTAGAATGTGAATATTGTGATAAGCAATTCCAAGATGTAAATTTCTTAACTGCACACCATGCATCTTGTGCCAAAAAATTAAAGCAAAGCAATACAGAAAAAAATATATCAAATGCAAAATGGGGTAAACATGCTTGTTCAGATTGTGGTAAAAAATTTACCACCAAACAAAAAATGTTTAGACATCAATGGATTCATAGAAAGAAGACACATTCATGTGAAATTTGTGGTTCACAATTTGAGAAACAATCTGAACTTGATGAACACAGATTATCAGCTCATCCAGGAGATTCTCCATTTACTTGTAATGAATGCGGCAAAAGTTTTGTATCTCGACAAGGCCTTTGGGAACATGGCAGGACCCATGCAGGGAGTCCAGCTTATTTTCAATGTGACACATGTTCAAAAACTTTTTCATCTCGACAAGGATATTTGATCCATCATCGCACGCATACAGGTGAAAGACCATATGGTTGTAAATTTTGCTGGAAGGCTTTTCGCGATGGGGGAACTTTAAGAAAACATGAAAGAATACATACAGGGGAAAGGCCTCACGTATGTCCATTGTGTGCAAGAGCTTTTAATCAAAAAGTTGTTTTACGTGAACATGTTCGATGGGTTCATGCTGCAGGAAAAAATGAAACTGACATCACTGAGCCTCCCTTTCCATGTCCTCTGTGTGAAACCTTAACTCAAGATAGAGATGAATTATGTGCTCATATTGTCAAACACTCAGATCAATTGATAGCAGAAGCTAAAGCTAAAAGTAATAATGCGACTGCAAAAACGAAACCACAGAAAAAAAAAGTAAAAACAATAGCTACTAAAACAAAAAAAAATAATCCAAAGGCATCAAGTGGAAGAATAATTTCAGTGGCAGAACAAAGTGAAGCATTACTTTCTATAACCGAACAAACAGATGCTGCAGAAGAAACACAGAGTGCATATGTAGTAGTGAAAAATGAATTCGATGATGAAGTGTGTATCAAAGCATATACTCAATCCAATGAAATAATCCAAACTGAAGCAGGAAGTGAGTCTATTAACGTTATAGCTATTGCTAAATCTTCAAATAGTAAAAATGAAGAACACAATATGCATTTGATTCCTTTTACTGCATCAGGTGAAACCATTCATCTTATCTCAAATAACAATCAAAATAATACATTGCATTTTATATCCAAACAAAATAAAAATTCGCCCGTTTTAACGATTCCCAATCCTCAGAGTAATGAACATTTTTCAAACCAGCTTACACAAATAACTGATTCAGAATCTTCAGTAGATATAAATACAAATCATAAAAAAGATACTGAAGAGCTCCATGCTGTAACTATGTTAATTGAGCCAGTACCTATGAAAGTTAGTAACCACAAGTTTGAAGAAATATTGATTGAAGAAGAATTAGTTGAAGAAAGCGAAGATGAAAGTGAAGAAATGATATGTGGTATTTGTGGAAGTGATTTTGAAGATAAAAATGTATTAATGGAACATGTAAAAATTCATATATAA
- Protein Sequence
- METNENEHYVTYTLDNVNEGMQDDIAHEEICEPVVECVLPETLTEVTVCDENSDITDAQVAVDILTENSEVDAEHGAVVYPIYIKKKISQQFTTGDESMAVEALRQLGGMYPCFEDKKVTCTNCNHSFKQADLEKHQTACLSDKQICKTCGERFERKMDLDNHMVCHQVDRPHACRTCGNLFRSKSNLQAHIAEVHQIERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQGNNVAISNSQEASILTTTVETIQNFEIPQVQWAVQTYNFSSDQGNIEEIVSQSDKVDTLQEFAVLPNGEVAQFEYTTQNAVGNQITQEYSLTLNTFNSSDNLLKLEAAGYTNDNKNAYIDISMQENKGHTCNQCGVSFARASSLSLHEKTHAKSESGSPVECEYCDKQFQDVNFLTAHHASCAKKLKQSNTEKNISNAKWGKHACSDCGKKFTTKQKMFRHQWIHRKKTHSCEICGSQFEKQSELDEHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCARAFNQKVVLREHVRWVHAAGKNETDITEPPFPCPLCETLTQDRDELCAHIVKHSDQLIAEAKAKSNNATAKTKPQKKKVKTIATKTKKNNPKASSGRIISVAEQSEALLSITEQTDAAEETQSAYVVVKNEFDDEVCIKAYTQSNEIIQTEAGSESINVIAIAKSSNSKNEEHNMHLIPFTASGETIHLISNNNQNNTLHFISKQNKNSPVLTIPNPQSNEHFSNQLTQITDSESSVDINTNHKKDTEELHAVTMLIEPVPMKVSNHKFEEILIEEELVEESEDESEEMICGICGSDFEDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144041;
- 90% Identity
- -
- 80% Identity
- -