Tsar006426.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01000040.1:52793-56443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5 5.3e+02 1.2 0.7 2 14 121 133 120 134 0.86 2 14 0.00036 0.038 14.2 1.5 3 20 148 165 146 168 0.95 3 14 0.00054 0.058 13.7 0.3 1 23 174 197 174 197 0.92 4 14 4.1e-06 0.00044 20.3 0.8 1 23 203 225 203 225 0.98 5 14 9.8e-06 0.0011 19.2 1.0 1 23 373 395 373 395 0.98 6 14 0.0016 0.17 12.2 0.1 2 20 405 423 404 425 0.93 7 14 0.00019 0.021 15.1 2.6 1 20 447 466 447 469 0.92 8 14 0.0015 0.16 12.3 0.6 1 23 474 497 474 497 0.95 9 14 6.2e-07 6.7e-05 22.9 0.3 1 23 503 525 503 525 0.99 10 14 8.2e-05 0.0087 16.3 4.2 1 23 532 554 532 554 0.99 11 14 0.00023 0.024 14.9 0.4 3 23 562 582 560 582 0.97 12 14 0.0011 0.12 12.7 0.1 1 23 588 611 588 611 0.96 13 14 0.019 2 8.8 0.2 1 23 625 647 625 647 0.97 14 14 0.048 5.1 7.5 0.0 3 23 877 897 875 897 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGACAAATGAAAATGAGCACTATGTTGCATATTCCTTGGATAATGTAAATGAAGGTTTGCAAGATAATATATCTCATGAAGAAATCTGTGAACCAGTTGACGAATGTGTACTGCAAGAAGGTTTAACTGAAGTCACTGTTTGCGATGAAAATTCAGATATCACGGATGCTCAAGTTGCTGTAGATATCTTAACGGAAAATTCTCAAGTTGATGCAGAACATGGTGCTGTTGTGTATCCCATTTATATCAAGAAAAAAGTATCACAACAGTTTACAACTGGAGATGAATCAATGGCTGTGGAAGCGTTACGTCAGTTAGGTGGAATGTATCCTTGTTTTGAAGATAAGAAAGTTACATGTACTAATTGTAgtaatacttttaaaaaagctgATTCAGACAAGCATCAAGCTACTTGTACATCTGATAAACAAATTTGTAAGACATGTGGTGAaagatttgaaagaaaaatagatttgAATAATCACATGGTGTGTCATCAAGTAGACCGACCTCATGCTTGCAGAACTTGTGGAAATCTATTTCGATCAAAAGCTAATTTGCAGGCTCATATAGCTGAGGTTCATCAAATTGAACGTCCTCACAAATGTTCAGTGTGTGGTGCAGATTTTCAAAGACCATCAAGTCTTTCCAATCATATGAAAATTCATAGTTACGTTGCCGGAAGAGCATTGATGCAAGGAAATAATACAACTAGgagtattgaaaatttcaaaactagATCCAATCCACAAGATTCATCAGTTCTAACAACTCAAGTTGAAGCTGGACAGAATTTTGAAATACCTCAAGTACAATGGGCTGTGCAGACGTATAATTTCACCAATGATGATCAAGGTAATATTGAAGGGATTGTTAGTCAATCTGACCAAGTTGATACATTACAAGAATTCACTGTGTTACCAAATGGCGAAGTAGCTCAGTTTGAATATACTACACAAAATGCAGTTGGAAATCAGATTGCTCAAGAATATAGCTTAActttaaatacttttaatagTTCCGATACCATATTAAAACTAGAAGCTACTGGTTATaccaatgaaaataaaagtgcttATGTTGATGTAAATATGCAAGAAAATAGAGGACATACTTGCAGCCAATGTGGGGTAAGTTTTGCACGTGCATCATCTTTATCATTACATGAAAAGACTCATACCAAAAGTGATTTGGGCTCTCCAGTAGAGTGTGAATATTGTGATAAACAATTCCAAGATTCAACTTTCTTGGCTACTCACCAAGCTTCTTGTgccaaaaaattaatgcaaaacaatacagataaaaatttatctaaTGCAAAATGGGGCAAACATGCTTGTTCAGAATGTGGTAAAAAATTcactacaaaacaaaaaatgtttaggCATCAATGGATACATAGAAAGAAGACACATTCATGCGAGATTTGTGGTTCCCAGTTTGAAAAACAATCTGAGCTAGATGAACATAGATTGTCAGAACATCCAGGGGATTCACCCTTTACTTGTAATGAATGTGGGAAAAGTTTTGTATCTCGCCAAGGGCTTTGGGAACATGGTAGAACTCATGCAGGAAGCCCAGCTTATTTTCAATGTGACACATGTTCCAAAACTTTTTCATCTCGTCAAGGGTATTTAATTCATCATCGCACACATACAGGTGAACGACCATACGGTTGCAAATTCTGCTGGAAAGCTTTTCGTGATGGAGGAACTTTAAGAAAACATGAAAGAATACATACAGGTGAAAGACCCCATGTCTGCCCACTATGTGCCAGAGCTTTTAATCAGAAAGTAGTTTTACGTGAACACGTTCGATGGGTTCATGCTgcaggaaaaaatgaaactgaTATTACTGAGCCACCATTTCCATGTCCTTTATGTGAAACCCTAACTCAAGATCGAGATGAACTGTGTGCTCATATTGTCAAACATTCAGATCAGTTGATAGCAGAAGCTAAAGCTAAAAGTAACAATGTGACTGGAAAAACAAAACCtcagaaaaagaaagttaaaCCGCTAgcttgtaaaacaaaaaagactAATTCGAAAGCATCGGGTGGTAGAATAATTTCTGTGACAGAACAAGCTGAAGCATTACTTTCAATCACTGAACAAACAGATGCTGCAGAAGAAACACCAAGTGCATATGTAGtagtaaaaaatgaatatgatGGTGAAGTCTGTATTAAAGCGTATACACAATCTAATGAAATGATTCAAAATGAATGTGAAACTGAGTCCATCAATGTTATAGCTATTGCTAAGTcttcgaataataaaaatgaagaacaTAGCATGCATTTGATTCCGTTATCTACACAAGGTGAAACCATACATCTTATCTCAAATAACAATCAAAATAACACATTGCACTTTATAtcaaagcaaaacaaaaattcaccTGTTTTAACAATTCCCAATCCTCAaaataatgaacatttttcaaatcaactCACCCAAATAACTGATTCTGAAACTTTAATGGATGTTGATAAAAAAGATACTGAAGAGCTTCATGCAGTAACCATGTTGATTGAGCCAGTAGATACTAATAATGAACTCAAATTTGAAGAAGTAATAAACGAAGAGGAAAGTGAAGATGAAAGTGAAGAAATGATATGTGGCATTTGTGGAAGTGACTTTCAagacaaaaatgtattaatggAACATGTGAAAATTCATATATAA
- Protein Sequence
- MMETNENEHYVAYSLDNVNEGLQDNISHEEICEPVDECVLQEGLTEVTVCDENSDITDAQVAVDILTENSQVDAEHGAVVYPIYIKKKVSQQFTTGDESMAVEALRQLGGMYPCFEDKKVTCTNCSNTFKKADSDKHQATCTSDKQICKTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKANLQAHIAEVHQIERPHKCSVCGADFQRPSSLSNHMKIHSYVAGRALMQGNNTTRSIENFKTRSNPQDSSVLTTQVEAGQNFEIPQVQWAVQTYNFTNDDQGNIEGIVSQSDQVDTLQEFTVLPNGEVAQFEYTTQNAVGNQIAQEYSLTLNTFNSSDTILKLEATGYTNENKSAYVDVNMQENRGHTCSQCGVSFARASSLSLHEKTHTKSDLGSPVECEYCDKQFQDSTFLATHQASCAKKLMQNNTDKNLSNAKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEICGSQFEKQSELDEHRLSEHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCARAFNQKVVLREHVRWVHAAGKNETDITEPPFPCPLCETLTQDRDELCAHIVKHSDQLIAEAKAKSNNVTGKTKPQKKKVKPLACKTKKTNSKASGGRIISVTEQAEALLSITEQTDAAEETPSAYVVVKNEYDGEVCIKAYTQSNEMIQNECETESINVIAIAKSSNNKNEEHSMHLIPLSTQGETIHLISNNNQNNTLHFISKQNKNSPVLTIPNPQNNEHFSNQLTQITDSETLMDVDKKDTEELHAVTMLIEPVDTNNELKFEEVINEEESEDESEEMICGICGSDFQDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144041;
- 90% Identity
- iTF_01274734;
- 80% Identity
- -