Basic Information

Insect: Apocheima hispidaria
Gene Symbol: -
Assembly: GCA_947579745.1
Location: OX388159.1:8999793-9020767[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00039 0.024 15.3 0.2 2 23 139 160 138 160 0.93

2 10 0.00056 0.035 14.8 2.4 1 23 166 188 166 188 0.96

3 10 0.00022 0.014 16.1 0.1 1 23 279 301 279 301 0.98

4 10 0.00049 0.031 15.0 0.0 3 23 381 402 379 402 0.90

5 10 0.0072 0.45 11.3 0.3 1 23 416 438 416 438 0.94

6 10 3e-05 0.0019 18.8 0.2 1 23 469 491 469 491 0.98

7 10 0.0006 0.038 14.7 0.2 1 23 497 519 497 519 0.97

8 10 0.00034 0.021 15.5 0.3 1 23 525 547 525 548 0.95

9 10 0.0061 0.39 11.5 1.0 1 23 561 583 561 583 0.95

10 10 0.006 0.38 11.5 0.2 1 20 722 741 722 744 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00039	0.024	15.3	0.2	2	23	139	160	138	160	0.93
2	10	0.00056	0.035	14.8	2.4	1	23	166	188	166	188	0.96
3	10	0.00022	0.014	16.1	0.1	1	23	279	301	279	301	0.98
4	10	0.00049	0.031	15.0	0.0	3	23	381	402	379	402	0.90
5	10	0.0072	0.45	11.3	0.3	1	23	416	438	416	438	0.94
6	10	3e-05	0.0019	18.8	0.2	1	23	469	491	469	491	0.98
7	10	0.0006	0.038	14.7	0.2	1	23	497	519	497	519	0.97
8	10	0.00034	0.021	15.5	0.3	1	23	525	547	525	548	0.95
9	10	0.0061	0.39	11.5	1.0	1	23	561	583	561	583	0.95
10	10	0.006	0.38	11.5	0.2	1	20	722	741	722	744	0.93

Sequence Information

Coding Sequence: ATGGATGGAGACAGAGAATTCAACCTCCACTGGGGAGGGGAGGTTGTGGTAAAGCATGATCCAGATGCCGTTACAAATGAAGTGATATGTGGATATGATAATGTACACAATACGTCATTTTCTAATATGACATCAGAAGAGATAATTACTAACACGGACCAAATGGCAGCAGAGAATTTGATGTTCCTCGCCCAAGATGTTGTCAGTTACACGGAGACAGCTGAGCTGGCTGATGACCCTAATGTTGAGTGCGTTACTGAGGAAGTCATTACTGATGACTGGGTTGGGGGCCAAGAAAGAGTGGAAGTTCCTATGGAGCACTTTACACATCCTATGTTAGAGCCAAAAGTGGAAAATGATATTGATGTACCTTTACCTACCGATCAAGATGAATACACAGCAATGCGGCCGTGGCCGTGCGATTTCTGCTCGCGTCGATTCCGCAAGAAAGCAGCGCTCATGAACCACATGGTGGCGCATCAGAACGACCGACCTCACGCGTGCAACCTCTGCGGCGTGCGATACGTGCGCAAGTGCGACCTCATGAACCATCTCAAAGTGCATGCTTTCGTGCCGGATGATGCCGATTCGCAGGACATCGAGGACATGCTAGAAAACAACCAAATCCTGAAACCAAAGAAGAAACGCGGACGGCGGAAAAAGGTCGTGGAACCCGAAGAGGACTCGTGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCTCGCCGCGGCCGGCGCCCGCGCCCTCGCCGCCGGAGCCCGAGCCGCAGCCGCCCGAGCCGGCGCCGCCGCCGCCGCCCGCGGACCCCGCGCGCCCCTTCGTGTGCCGCACCTGCGGGATCGGCTTCGCGAGGGAGAAGGCCTTGCAGTCGCACTCTAGGGTGCACGGCGGTGATTCCCCGATAGACTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGGGAGGCGCTGGCGAAGCACGCGGCGGCGCGCCATCCGCACGCGGCGCCGCGCCCCGCGCCCGCTGACACGTACAACGAGTCCGACTCCGGAGACGACATGGACTACCGGCTGTCGCCCGAGTCCCAGCCGAGCGGCGGCACCGAGCGTGCGGTCTTCGACACGATGCGAGGCCCCGAGCTGTTCTGCTCCGACTGCGGGGTGGCCTTCCAACGTGCAGACCTGCTGAGGAGACACGTCGCTGCCGCGCACAGCTACGTGCGAGGCGCGGGCGCGGGCGCGGGAGGCGAGCACACGTGCGGCGTGTGCGGCGAGCGCTGCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGCTGCACGCAGACCGACACGCCGACCGCCTCGCGCCCAGGATAAAAGTAAAGTCTCGCGGTCGTAACAGCACATCGATATCAAGCAATTCACGACAATTTCCGTGTAGAGAATGCGGCAAAGTGTTCGGGTCGCGCAGTTCACAGCAGATCCACGTCCGGATACACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGTTGGAAGGCGTTCGCGGACGGAGGCACGCTGCGCAAGCACGAGCGGATACACACGGGCGAGAAGCCGTACGCGTGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTCGTGCTCAGGGAGCACGTGCGCTCGCATCACTCCGCGCCCGACCGGAGAGCCAACGGGGGTCCCGCGTACTGCTGCGTGGTGTGCGGCCGCACGCTGCACTCCAGCTCGGAGTTGGTGCTGCATCTCATCGAGCACTGCGACGCTAACACGGCACTGAAGAGACAGCCGCAGGCCGGTCCCCGCAAGTACAAGCGAAGACGGAAAGTGAAGAGCGACGTGTCGCCGGCGCGGCGCGAGTGGCACTCGCCCTCGCCGATGCCGTCCCACTCGCCCTCGCCTGCGCGGTCGCCCTCGCCGCCGCCGGCGGAGTCTCCGCCGCGCCGCCGCCGCCGCCGCGAGCCGCCGCCCCGCCCTCGCATGATACACACCGAGGAACCCAAAACTAAAACCAAACCGGTCCGTCAGCGCCGGCCGCCGCGGCACCCCGCTGACGACCTGCGTGCCATCGGCCCCCACTCGCCGTCCCCGAAACGCGAGCCCCCCTCCCCGACACGGTACGAGTCCCCCCCACCCCCGCCCGCGGCCGTCGAGGCCGACCCCGGGAGCCCGTTCAAATGCGAAATGTGTTCAGAAGAGTTTCAGCGGCGAGACGACTTATTACTCCACGTGCCTGTGCATATATGA
Protein Sequence: MDGDREFNLHWGGEVVVKHDPDAVTNEVICGYDNVHNTSFSNMTSEEIITNTDQMAAENLMFLAQDVVSYTETAELADDPNVECVTEEVITDDWVGGQERVEVPMEHFTHPMLEPKVENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDDADSQDIEDMLENNQILKPKKKRGRRKKVVEPEEDSWENMTSARTQQWSRRARSPRPAPAPSPPEPEPQPPEPAPPPPPADPARPFVCRTCGIGFAREKALQSHSRVHGGDSPIDCGECGELCWSREALAKHAAARHPHAAPRPAPADTYNESDSGDDMDYRLSPESQPSGGTERAVFDTMRGPELFCSDCGVAFQRADLLRRHVAAAHSYVRGAGAGAGGEHTCGVCGERCTDALQLLAHAELHADRHADRLAPRIKVKSRGRNSTSISSNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSSELVLHLIEHCDANTALKRQPQAGPRKYKRRRKVKSDVSPARREWHSPSPMPSHSPSPARSPSPPPAESPPRRRRRREPPPRPRMIHTEEPKTKTKPVRQRRPPRHPADDLRAIGPHSPSPKREPPSPTRYESPPPPPAAVEADPGSPFKCEMCSEEFQRRDDLLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00926855; iTF_00033155; iTF_00034055; iTF_00826094; iTF_00044753; iTF_00207217; iTF_00206337; iTF_00666747; iTF_00635645; iTF_00634739; iTF_00896157;
90% Identity: iTF_00207217;
80% Identity: -