Amar017127.2
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000178.1:1169843-1195108[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.026 15.3 0.2 2 23 139 160 138 160 0.93 2 11 0.00065 0.038 14.8 2.4 1 23 166 188 166 188 0.96 3 11 0.00029 0.017 15.9 0.2 1 23 277 299 277 299 0.98 4 11 5.8 3.4e+02 2.3 0.2 3 23 307 328 306 328 0.91 5 11 0.00057 0.033 15.0 0.0 3 23 379 400 377 400 0.90 6 11 0.022 1.3 9.9 0.2 1 23 410 432 410 432 0.93 7 11 3.5e-05 0.0021 18.8 0.2 1 23 462 484 462 484 0.98 8 11 0.00069 0.041 14.7 0.2 1 23 490 512 490 512 0.97 9 11 0.00039 0.023 15.5 0.3 1 23 518 540 518 541 0.95 10 11 0.0071 0.42 11.5 1.0 1 23 554 576 554 576 0.95 11 11 0.0015 0.089 13.6 0.1 1 20 715 734 715 737 0.93
Sequence Information
- Coding Sequence
- ATGGACGGCGACAGAGAATTCAACCTCCACTGGGGAGGGGAGGTTGTGGTGAAGCATGATCCAGACACAGTTACAAATGAAGTGATATGTGGATATGATAATGTTCACAATTCTTCATTTTCCAACATGACTTCAGAAGAAATGATAACTAATACGGATCAAATGGCAGCCGAGAACTTGATGTTTCTCTCTCAAGATGTTGTCGGTTACACGGAGACAGCTGAACTGGCCGACGATCCTAATGTTGAGTGTGTTACTGAGGAAGTCATCACTGATGATTGGGTCGGTGGACAAGAGAGAATGGAAGTTCCTCTAGAACATTTTACACATCCCATGTTAGAGCCAAAAGTGGAGAATGATATTGACGTACCATTACCTACTGATCAGGACGAGTACACAGCAATGCGGCCGTGGCCGTGCGACTTTTGTTCACGTCGGTTTCGCAAGAAGGCAGCGCTCATGAACCACATGGTGGCACATCAGAACGACCGACCTCATGCGTGCAATCTCTGCGGCGTCCGCTACGTGCGCAAGTGTGATCTCATGAACCACCTTAAAGTGCACGCCTTTGTGCCGGACGACGCCGACTCGCAGGACATTGAAGACATGCTAGAAAACAACCAACTCTTAAAACCAAAGAAAAAGCGCGGTCGACGGAAAAAGGCTCCGGAACCCGAGGAGGACTCGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCACGCCCCGCCCGCCGCCCGTGCCCTCCCCTCCGGCGCCCGCGCCGGAGCCCCCCTCGCCGCCGCCGCCGCCCGCTGACCCCGCCCGCCCCTTCGTCTGCCGGACATGCGGCCTTGGCTTCGCCAGGGAGAAGGCGCTGCAGTCGCACTCTAGGGTGCACGGCGGTGATTCCCCGATGGATTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGATGCGCTGGCGCAGCACACGGCGTCGCGCCACCCGCACGCGGCGCCGCGCTCCGTCCCTGCAGACACATACAACGACTCGGACTCTGGAGACGACATGGAATACCGGCTGTCGCCCGAGTCTCAGCCAAGCGGTGGCACCGAACGTGCAGTGTTCGACACGATGCGAGGCCCCGAGCTGTTCTGCTCAGATTGCGGAGTCGCCTTCCAACGTGCTGACTTGCTGAGGAGACACGTTGCTGCTGCACATAGCTACGTGCGAGGCGCGGGCGGCGAGCACGCGTGCGGCGTGTGTGGCGAGCGCTGCACGGATGCGCTGCAGCTGCTGGCGCACGCCGAGCTGCACGCTGACCGGCACGCCGACCGCCACGCGCCCAGGATAAAAGCAAAATCTCGCGGTAACAGCACATCAATATCGAGCAATTCCCGACAATTTCCGTGTAGAGAATGTGGTAAAGTGTTCGGGTCACGCAGCTCTCAACAGATCCATGTGCGGATCCACACTGGCGAGCGCCCGTACGCGTGCCGCTTCTGTTGGAAGGCGTTCGCGGACGGAGGCACGCTGCGGAAGCACGAGCGGATACACACCGGCGAGAAGCCGTACGCATGCGCCGTGTGCCCGCGCGCGTTCAACCAGCGCGTCGTGCTCAGAGAACATGTGCGCTCGCATCACTCGGCGCCCGACCGCAGAGCCAACGGTGGTCCCGCGTACTGCTGCGTGGTTTGCGGACGCACGCTGCACTCCAGTTCGGAACTGGTGCTCCATCTCATAGAGCACTGCGACGCTAACACGGCACTGAAGAGACAGCCTCAGTCCGGCCCCCGCAAATATAAGCGAAGACGGAAAGTGAAGAGTGAAGTGTCGCCGGCGCGGCGCGAGTGGCGCTCGCCCTCGCCGCTGCCGTCTCATTCGCCCTCGCCCGCGCACTCGCCCTCGCCCCCGCCGGCGGAGTCCCCGCCCCGCCGCCGGCGCCGCCGCGAGCCGCCGCCCCGACCGCGCATGATACACACACAACCCAACACAAGAAGCAAACAGGTAAAACTAAAGGTCCGTCAGCGACGGCCGCCGCGGCACCCCGCAGACGACCTGCGTGCCATCGGCCCTCACTCACCGTCCCCGAAGCGTGAGCCCCTCTCCCCGCCCCGCCAGGAGACTCCGCCCCCGGCTGACGAAGCCGAGCCGGGCTGCCTATACAAATGTGAGATGTGCTCAGAAGAGTTCAAGCAACGAGAAGACTTGCTTCTCCATGTGCCCGTGCATATATGA
- Protein Sequence
- MDGDREFNLHWGGEVVVKHDPDTVTNEVICGYDNVHNSSFSNMTSEEMITNTDQMAAENLMFLSQDVVGYTETAELADDPNVECVTEEVITDDWVGGQERMEVPLEHFTHPMLEPKVENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDDADSQDIEDMLENNQLLKPKKKRGRRKKAPEPEEDSWENMTSARTQQWSRRARTPRPPPVPSPPAPAPEPPSPPPPPADPARPFVCRTCGLGFAREKALQSHSRVHGGDSPMDCGECGELCWSRDALAQHTASRHPHAAPRSVPADTYNDSDSGDDMEYRLSPESQPSGGTERAVFDTMRGPELFCSDCGVAFQRADLLRRHVAAAHSYVRGAGGEHACGVCGERCTDALQLLAHAELHADRHADRHAPRIKAKSRGNSTSISSNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSSELVLHLIEHCDANTALKRQPQSGPRKYKRRRKVKSEVSPARREWRSPSPLPSHSPSPAHSPSPPPAESPPRRRRRREPPPRPRMIHTQPNTRSKQVKLKVRQRRPPRHPADDLRAIGPHSPSPKREPLSPPRQETPPPADEAEPGCLYKCEMCSEEFKQREDLLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143273;
- 90% Identity
- iTF_00207217;
- 80% Identity
- -