Basic Information

Insect: Ectropis grisescens
Gene Symbol: -
Assembly: GCA_017562165.1
Location: chr08:18113138-18138658[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00037 0.021 15.3 0.2 2 23 139 160 138 160 0.93

2 10 0.00054 0.03 14.8 2.4 1 23 166 188 166 188 0.96

3 10 0.00012 0.0068 16.8 0.1 1 23 274 296 274 296 0.98

4 10 0.00047 0.026 15.0 0.0 3 23 376 397 374 397 0.90

5 10 0.0086 0.49 11.0 0.3 1 23 410 432 410 432 0.95

6 10 2.9e-05 0.0016 18.8 0.2 1 23 460 482 460 482 0.98

7 10 0.00057 0.032 14.7 0.2 1 23 488 510 488 510 0.97

8 10 0.00032 0.018 15.5 0.3 1 23 516 538 516 539 0.95

9 10 0.0013 0.074 13.6 0.2 1 23 552 574 552 574 0.97

10 10 0.0034 0.19 12.3 0.1 1 20 706 725 706 728 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00037	0.021	15.3	0.2	2	23	139	160	138	160	0.93
2	10	0.00054	0.03	14.8	2.4	1	23	166	188	166	188	0.96
3	10	0.00012	0.0068	16.8	0.1	1	23	274	296	274	296	0.98
4	10	0.00047	0.026	15.0	0.0	3	23	376	397	374	397	0.90
5	10	0.0086	0.49	11.0	0.3	1	23	410	432	410	432	0.95
6	10	2.9e-05	0.0016	18.8	0.2	1	23	460	482	460	482	0.98
7	10	0.00057	0.032	14.7	0.2	1	23	488	510	488	510	0.97
8	10	0.00032	0.018	15.5	0.3	1	23	516	538	516	539	0.95
9	10	0.0013	0.074	13.6	0.2	1	23	552	574	552	574	0.97
10	10	0.0034	0.19	12.3	0.1	1	20	706	725	706	728	0.93

Sequence Information

Coding Sequence: ATGGACGGAGATAGGGAATTCAATCTCCACTGGGGAAGGGAAGTGGTGGTTAAGCATGATCCAGATACAGTTACCAATGAAGTGATATGTGGATATGACAATGTTCATAATTCCTCATTTTCCAACATAACATCAgaagaaataataacaaatacggATCAAATGGCAGCTGAGAATCTGATGTTTCTCTCCCAAGATGTGGTGGGTTACACGGAGACAGCTGAGTTGGCAGATGACCCTAATGTGGAGTGTGTCACAGAGGAAGTCATCACAGATGATTGGGTCGGTGGGCAAGAGAGAGTCGAAGTGCCTATGGAGCACTTTACACATCCCATGTTGGAGCCCAAGGAAGAAAATGACATTGATGTACCATTGCCAACAGATCAGgATGAGTACACGGCAATGCGACCGTGGCCGTGCGACTTCTGTTCCCGGCGGTTCCGCAAGAAGGCGGCCCTGATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCGTGCAACCTCTGCGGCGTGCGGTACGTGAGGAAGTGCGACCTCATGAACCATCTCAAGGTGCACGCGTTCGTGCCCGACGACGCCGACTCGCAGGACATCGAGGAGCTGCTAGAAAACAACCAAATTATAAAACCAAAGAAGAAACGCGGCCGACGGAAAAAGATCCCGGAACCCGAGGAGAACATGACGTCGGCGCGCACGCAGCAGTGgcagcggcgcgcgcgctcgccgcgcccgccgcccgcgccctccCCTCCGCCTGCGCCCGCCCCGCCctcgccgccgcccgcgcccgcgcccgcggaCCCCGCGCGCCCCTTCGTCTGCCGGACCTGTGGCATCGGGTTTGCGAGGGAGAAGGCGCTACAGTCGCATGCGAGGGTGCACGGCGGCGACTCGCCGATCGACTGCGGGGAGTGCGGGGAGCTGTGCTGGTCGCGCGACGCGCTGGCGCAGCACGCGGCCGCGCGCCACCCGCACGCCGCGCCCCGCTCCGCCCCCTCCGACACCTACAACGACTCCGACTCCGACGATGACATGGAATACCGTCTATCGCCCGAGTCTCAGCCGAGCGGCGGCACCGAGCGCGCCGTGTTCGACACGATGCGAGGCCCCGAGCTCTTCTGCTCGGACTGCGGCGTCGCGTTCCAGCGAGCCGACCTACTGCGGAGACACGTCGCGGCGGCACACAGCTActcgcgcggcgcgggcgcgggcgcgggcgagcACGCGTGCGGCGTGTGCGGCGAGCGCTGCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGCGGCACTCCGACCTGCTCGCGCCCAGAATAAAAGCGAAATCTCGTGGTAGAAACAGCAGTATTTCAATATCAAGCAACTCGCGCCAGTTTCCTTGTAGAGAGTGTGGCAAAGTGTTCGGGTCGCGCAGTTCGCAGCAGATCCACGTGCGGATACACACGGGCGAGCGTCCGTACGCGTGCCGCTTCTGCTGGAAGGCGTTCGCTGACGGCGGCACGCTGCGCAAGCACGAGCGGATACATACGGGCGAGAAGCCGTACGCGTGCGCCGTGTGCCCGCGCGCGTTCAACCAGCGCGTCGTGCTGCGCGAGCACGTGCGGAGCCACCACTCGGCGCCCGACCGCCGCGCCAACGGCGGTCCGGCGTACAGCTGCGTGGTGTGCGGGCGCACGTTGCACTCCAGCTCGGAGTTGGTGCTGCACATCATCGAGCACTGCGACGCCAACACCGCGATGAAGAGGCAGCCGCAGGCCGGTCCTCGCAAGTACAAGCGGCGGCGGAAAGTGAAGAACGAGGCGTCGGAGGCGCGGCGCGAGTGGAACTCCCGCTCGCCGTCGGGCTCGCCCTCCCCCGCGCGCTCCCCGTCCCCCGCGCGCTCGCCATCGcctgcgccgccgccgcgccgccgccgccgccgcgatccgcccgcgcccgcgccgcgcccgcgcatgATACACACCGAGGAACCCACGCCCAGGACCAAGCAGCTCCGGCAGCGCCGACCGCCGCGGCACCCGGCTGACGACCTGCGCGCCATCGGGCCGCACTCCCCCTCCCCGGAGCGCGCGGCGTCCCCTCCCGGCCCCGCGCCCGACCCAGGCGGGCCCTACAAGTGCGAGATGTGCTCCGAGGAGTTCGAGCAACGAGACGAGCTCTTACTCCACGTGCCCGTGCATATATGA
Protein Sequence: MDGDREFNLHWGREVVVKHDPDTVTNEVICGYDNVHNSSFSNITSEEIITNTDQMAAENLMFLSQDVVGYTETAELADDPNVECVTEEVITDDWVGGQERVEVPMEHFTHPMLEPKEENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDDADSQDIEELLENNQIIKPKKKRGRRKKIPEPEENMTSARTQQWQRRARSPRPPPAPSPPPAPAPPSPPPAPAPADPARPFVCRTCGIGFAREKALQSHARVHGGDSPIDCGECGELCWSRDALAQHAAARHPHAAPRSAPSDTYNDSDSDDDMEYRLSPESQPSGGTERAVFDTMRGPELFCSDCGVAFQRADLLRRHVAAAHSYSRGAGAGAGEHACGVCGERCTDALQLLAHAERHSDLLAPRIKAKSRGRNSSISISSNSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYSCVVCGRTLHSSSELVLHIIEHCDANTAMKRQPQAGPRKYKRRRKVKNEASEARREWNSRSPSGSPSPARSPSPARSPSPAPPPRRRRRRDPPAPAPRPRMIHTEEPTPRTKQLRQRRPPRHPADDLRAIGPHSPSPERAASPPGPAPDPGGPYKCEMCSEEFEQRDELLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00143273;
90% Identity: iTF_00634739;
80% Identity: -