Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:2216638-2220266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 86 3.4 0.2 6 21 10 25 5 26 0.84

2 13 0.0094 0.71 10.0 0.2 2 20 32 50 31 52 0.93

3 13 3.6 2.7e+02 1.8 1.9 1 12 147 158 147 167 0.81

4 13 5.4 4.1e+02 1.3 1.2 6 19 362 375 358 378 0.89

5 13 0.00011 0.0085 16.0 0.6 1 23 412 434 412 434 0.97

6 13 0.57 43 4.4 5.9 1 23 470 492 470 492 0.94

7 13 0.00021 0.016 15.1 0.7 2 23 503 524 502 524 0.96

8 13 0.0018 0.13 12.2 1.0 1 23 535 557 535 557 0.97

9 13 5.5e-07 4.1e-05 23.3 1.1 1 23 563 585 563 585 0.97

10 13 0.011 0.86 9.7 1.4 1 23 591 615 591 615 0.94

11 13 0.0018 0.14 12.2 1.8 1 23 621 643 621 643 0.97

12 13 9e-05 0.0068 16.3 6.8 1 23 647 669 647 669 0.98

13 13 0.11 8 6.7 0.5 1 23 676 699 676 699 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	86	3.4	0.2	6	21	10	25	5	26	0.84
2	13	0.0094	0.71	10.0	0.2	2	20	32	50	31	52	0.93
3	13	3.6	2.7e+02	1.8	1.9	1	12	147	158	147	167	0.81
4	13	5.4	4.1e+02	1.3	1.2	6	19	362	375	358	378	0.89
5	13	0.00011	0.0085	16.0	0.6	1	23	412	434	412	434	0.97
6	13	0.57	43	4.4	5.9	1	23	470	492	470	492	0.94
7	13	0.00021	0.016	15.1	0.7	2	23	503	524	502	524	0.96
8	13	0.0018	0.13	12.2	1.0	1	23	535	557	535	557	0.97
9	13	5.5e-07	4.1e-05	23.3	1.1	1	23	563	585	563	585	0.97
10	13	0.011	0.86	9.7	1.4	1	23	591	615	591	615	0.94
11	13	0.0018	0.14	12.2	1.8	1	23	621	643	621	643	0.97
12	13	9e-05	0.0068	16.3	6.8	1	23	647	669	647	669	0.98
13	13	0.11	8	6.7	0.5	1	23	676	699	676	699	0.96

Sequence Information

Coding Sequence: ATGGAGAGCGTTGCGTGTCCACTTTGCTGCGAGGACAAGTTTTCCAATCAAGACTTAttgaaatatcatttattaagtttaactaCAAATATTCAGTGCCCTTTCTGTGGAAAACAGTGTGATGATATTACTTCATTGGTCGCGCATTTGGATAAAATTTGCACAGATAAGGAAGATGAAGCTGAGAAATCCATGCAGGATAACAATGAAATGATCGTCGTATATCCAGATGatgaCGAACCAGAACCAGATAATGAAGTTGGAGATTTTGATAATCTTGTGGGAGAAGAAGATTACCAGAATGATGAACGGCAAATTGATACTGATACTGAAACTGGAGTTAAGAAATTTATTGAAGAATTTACAATTGATGATCCGACGAAAACATTGCGTCCATCAGACTTAATAGAAACAGAAATTATTGAAGAACCACATCTTTATCACTGTTctgaatgtaatataaattttccaTCAATTCAggaacatataaataaatgtcacAAAGATCAAGAAGTTGTGTTTCAGgtaaatgaaaatgaaaatctcAATAATGCATTAAAAGATATTCCGGGTACCATTAACGAACAAAATCCTGAGATGGGAAATTGGATTAAATGGGGAAATGGCTACTTTTTTACAAACCATAAAGATGTGGCAATGAAGCAtttggttaatattaaatcagaaGTAATAAAAgatgaagataaaaaaattaaaagtgatgtatatcaaaataacacAGGCAAGTTTTCTTCTAATGTTTATTCAAATCATTGCATCACGGATTCATATGGTGATCGGTATTTTGATGTTCCCGTTTATTTACTTCATCAAGTAGCTATAGCTGATAAAGTTAATGATTATTTCCAAGTTGAAGCCCGCAAATTAAGTTTCAAGAAACGAATCCGTGTTGTGCGATTAAAATccaatattaatcaattcgATATTGagcaaatattatttcaaaataaaccaaCTAATTGCAACATTATTCcaatattagaaaaatcatCTGAATGTAATGAATACTCTCAGTTAGAAAACttagaaaattgtttattgttaactTGGAAGTGTATagcatgtaatataaaatctgaCCATTGGTCCAAGTTAAACAAACATAACTGTATAGAAGATGATGCAATGACATCTaagtctaaaaaaaatgttgataacaaAAATCCAGCCATTCGAAATAATAATCGCACAGTTCCTAATGTCCGATCAAAACATATTTGTCCACATTGTGGTGGAGAATTTGATTCAGAAGGTTATTTAAGAACACATCTTATGGTACATATAAATGATTCAAATAAATGTCCATTTTGTGATCAACCAGTAGCACCTGAAATGATGGACACACATTTAATTGCTCATCAAAATCCTGAATTTTCTAATCTAAAGTTTTTATGCaatgtatgtaataaatgttatgattCGGAATTTCGTCTACGGTGTCATCAAAGAGCACATGAAATGCGACGTAAACCACGTGAAATATTAGTTTGTGATGTTTGCAATGCTcagtttaatgataaaaactcTTTGAAACATCATGCCATCACACATATTGAACCTCCTGAACGTTTACGCCGATTACACGAATGTCGTTTCTGTGGAAAGACTTTTGTTAAACCTATTGAGAaaGTTAATCATGAAAGAGTGCATACTGGTGAAAAACCTTTTGCCTGTCCAGTATGTGGTCGTTGTTTCAGACTTAAGGATCTCGTACAGAAACATATGCGTGTACATACCAAAGAACGCCCTTACAAATGCCGCCATGAAGGTTGTGATAAAACATTCAGTGCATCAAGTAGTAGAGTAAATCATGAACAAGGCCATTCCGGTATCAagcaatttaaatgtttttattgtcctagatattttaaaaattgggtGTCAAGAAGTAACCATGTCCAAGAGCATATGGTTCAGCACAAATGTGACATTTGTGATCGTTCTTTTGtatcattttgtaattataagaaacatttgaaaatgcaTGCAGAAGGACGGCTCAAATTTAGTTGTGTACTATGCCGTCAAGCATTTGGAAGACAACTGTTTTTAGATAATCATCTAAGTAAAGAACATGAAATGAAATCAAATAAAGAAGAAGAcaactga
Protein Sequence: MESVACPLCCEDKFSNQDLLKYHLLSLTTNIQCPFCGKQCDDITSLVAHLDKICTDKEDEAEKSMQDNNEMIVVYPDDDEPEPDNEVGDFDNLVGEEDYQNDERQIDTDTETGVKKFIEEFTIDDPTKTLRPSDLIETEIIEEPHLYHCSECNINFPSIQEHINKCHKDQEVVFQVNENENLNNALKDIPGTINEQNPEMGNWIKWGNGYFFTNHKDVAMKHLVNIKSEVIKDEDKKIKSDVYQNNTGKFSSNVYSNHCITDSYGDRYFDVPVYLLHQVAIADKVNDYFQVEARKLSFKKRIRVVRLKSNINQFDIEQILFQNKPTNCNIIPILEKSSECNEYSQLENLENCLLLTWKCIACNIKSDHWSKLNKHNCIEDDAMTSKSKKNVDNKNPAIRNNNRTVPNVRSKHICPHCGGEFDSEGYLRTHLMVHINDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNVCNKCYDSEFRLRCHQRAHEMRRKPREILVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCDKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHAEGRLKFSCVLCRQAFGRQLFLDNHLSKEHEMKSNKEEDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01304424; iTF_01305097; iTF_01329291; iTF_00973289; iTF_00463604; iTF_01038724; iTF_01033293; iTF_00184847; iTF_01032441; iTF_00019709; iTF_00942195; iTF_01350324; iTF_01167967;
90% Identity: iTF_00973289; iTF_01304424; iTF_01305097; iTF_01329291;
80% Identity: -