Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01001399.1:311765-316203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7 1.7e+02 3.5 0.2 6 21 10 25 5 26 0.84

2 12 0.019 1.8 9.7 0.2 2 20 32 50 31 52 0.93

3 12 3.2 3.1e+02 2.6 1.0 1 12 147 158 147 167 0.88

4 12 0.00019 0.018 16.0 0.6 1 23 426 448 426 448 0.97

5 12 2.5 2.4e+02 3.0 6.8 1 23 484 506 484 506 0.94

6 12 0.0005 0.049 14.6 1.1 2 23 517 538 516 538 0.96

7 12 0.003 0.29 12.2 1.0 1 23 549 571 549 571 0.97

8 12 9.1e-07 8.8e-05 23.3 1.1 1 23 577 599 577 599 0.97

9 12 0.019 1.8 9.7 1.4 1 23 605 629 605 629 0.94

10 12 0.0031 0.3 12.2 1.8 1 23 635 657 635 657 0.97

11 12 0.00015 0.015 16.3 6.8 1 23 661 683 661 683 0.98

12 12 0.21 21 6.4 0.7 1 23 690 713 690 713 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7	1.7e+02	3.5	0.2	6	21	10	25	5	26	0.84
2	12	0.019	1.8	9.7	0.2	2	20	32	50	31	52	0.93
3	12	3.2	3.1e+02	2.6	1.0	1	12	147	158	147	167	0.88
4	12	0.00019	0.018	16.0	0.6	1	23	426	448	426	448	0.97
5	12	2.5	2.4e+02	3.0	6.8	1	23	484	506	484	506	0.94
6	12	0.0005	0.049	14.6	1.1	2	23	517	538	516	538	0.96
7	12	0.003	0.29	12.2	1.0	1	23	549	571	549	571	0.97
8	12	9.1e-07	8.8e-05	23.3	1.1	1	23	577	599	577	599	0.97
9	12	0.019	1.8	9.7	1.4	1	23	605	629	605	629	0.94
10	12	0.0031	0.3	12.2	1.8	1	23	635	657	635	657	0.97
11	12	0.00015	0.015	16.3	6.8	1	23	661	683	661	683	0.98
12	12	0.21	21	6.4	0.7	1	23	690	713	690	713	0.96

Sequence Information

Coding Sequence: ATGGAGAGCGTCGCGTGCCCACTTTGCTGCGAGGACAGATTTTCCAACCAagacttattaaaatatcatttattaagtTTGACCACAAATATTCAGTGTCCTTTCTGTGGAAAACAGTGCGATGACATCAACTCATTGGTCGCACATTTGGATAAAATTTGCTCCGACAAGGAAGATGAAACTGAGAAATCAATGCAAGACAACGATGAAATGATCGTAGTGTATCCAGATGacgATGAACCGGAACCAGATAATGAGGGTGGAGAATACGATAACCTTGTGAGAGAAGAAGATTATCAGAATGATGAGCGGCAAACTGAAACTGATGCAGAAACTGGAGTTAAGAAATTTATTGAAGAATTTACAATTGATGATCCAACTAAAACATTGCGTCCATCAGAAACAGTAGAAACAGAAATCCTCGAAGAATCAAATCTCTATCACTGTTCTGAATGCAATATAAATTTCCCATCAATTGAAGagcatataaataattgtcacAAAGGTCAAGAAGTTGTATTTCAGGTAAATGAAAATGATAACCCCAATAATACAGTAAAAGATATTCCTGGTACCATTGGCGAACAAAATCCTGAGAGGGGAACTTGGATCAAATGGGGAAATGGCTACTTTTTTACAAACCATAAAGATGTGGCAATGAAGCATTTGGATAATATTAAATCAGAAGAAACAACAACTATGAAAACTATTTCAGAAGATTTTGTTGAAGTAATAAAAGATggaaatactaaaattaaaagtgaAGCGTATCAAAATCATACTAGCATGTTTTCttctaatatttattcaaatcattGTATCACGGATTCATATGGGGATCGATATTTTGATATTCCCGTTTATTTACTTCATCAAGTAGCTGTAGCTGATAAAGTAAATGATTATTTCCAAGTCGAAGCCCGTAAATTAAGTTTCAAGAAGCGAATCCGTGTTATACGATTAAAATCTGATATTAATCAATTTGATATTGagcaaatattatttcaaaacaaacCAACTAATTGCAACATTATTccaattttagaaaaatcatCTGAATGTAATGATTACTCTCAATTAGAAAATTTGGagaattgtttattgttaacTTGGAAGTGTATAGCATGTAATGTTAAATCTGACCATTGGtctaaattaaacaaacataacTGCATAGAAGATGATGCAACAACacctaaatctaaaaaaaatgtcgatAACAAAAATCCAGCTATTCGTAATAATAGTCGCACAGTTCCTAATATTCGATCAAAACATATTTGTCCACATTGTGGTGGAGAATTTGATTCAGAAGGTTATTTAAGAACACATCTTATGGTACATGTAAATGATTCAAATAAATGTCCATTTTGTGATCAACCAGTAGCACCTGAAATGATGGACACACATTTAATTGCTCATCAAAATCCTGAATTTTCTAATCTAAAATTTTTATGCAAtacgtgtaataaatgttatgattcGGAATTTCGTCTTCGGTGTCATCAAAGAGCACATGAAATGCGACGTAAACCAcgtgaaatattaatttgtgatgTTTGCGATGCTCATTTTATCGATAAAAACTCTTTGAAACATCATGCCATCACACATATTGAACCTCCTGAACGTTTACGTCGATTACACGAATGTCGTTTCTGTGGAAAAACTTTTGTTAAACCTattgaaaaaGTAAACCATGAAAGAGTGCACACTGGTGAAAAACCTTTTGCCTGTCCAGTATGTGGTCGTTGTTTCAGACTCAAGGATCTCGTACAAAAACATATGCGTGTACATACCAAAGAACGCCCTTACAAATGCCGTCATGAAGGTTGTGATAAAACATTCAGTGCATCAAGTAGTAGAGTTAATCATGAACAAGGCCATTCCGGTATCAAGcagtttaaatgtttttattgtccTAGATATTTTAAGAATTGGGTGTCAAGAAGTAATCATGTCCAAGAACATATGGTTCAGCATAAATGTGACATTTGTGATCGTTCTTTTGTGTCATTTTGTAACTATAAGAAACATTTGAAAATGCATGCAGAGGGACGGCTCAAATTCAGTTGTATGCTATGCCGTCAGGCATTTGGAAGACAACTGTTTTTAGATAACCATCTAAGTAAGGAACATGAAATGAAATCAAATAAAGAAGAAAacgtaattgaataa
Protein Sequence: MESVACPLCCEDRFSNQDLLKYHLLSLTTNIQCPFCGKQCDDINSLVAHLDKICSDKEDETEKSMQDNDEMIVVYPDDDEPEPDNEGGEYDNLVREEDYQNDERQTETDAETGVKKFIEEFTIDDPTKTLRPSETVETEILEESNLYHCSECNINFPSIEEHINNCHKGQEVVFQVNENDNPNNTVKDIPGTIGEQNPERGTWIKWGNGYFFTNHKDVAMKHLDNIKSEETTTMKTISEDFVEVIKDGNTKIKSEAYQNHTSMFSSNIYSNHCITDSYGDRYFDIPVYLLHQVAVADKVNDYFQVEARKLSFKKRIRVIRLKSDINQFDIEQILFQNKPTNCNIIPILEKSSECNDYSQLENLENCLLLTWKCIACNVKSDHWSKLNKHNCIEDDATTPKSKKNVDNKNPAIRNNSRTVPNIRSKHICPHCGGEFDSEGYLRTHLMVHVNDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNTCNKCYDSEFRLRCHQRAHEMRRKPREILICDVCDAHFIDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCDKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHAEGRLKFSCMLCRQAFGRQLFLDNHLSKEHEMKSNKEENVIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136382;
90% Identity: iTF_00136382;
80% Identity: -