Basic Information

Insect: Nasonovia ribisnigri
Gene Symbol: -
Assembly: GCA_027563275.1
Location: JANEHQ010000101.1:163153-165619[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.8 2.1e+02 3.5 0.2 6 21 10 25 5 26 0.84

2 13 0.03 3.5 9.1 0.2 2 20 32 50 31 52 0.92

3 13 7.2 8.5e+02 1.6 2.0 1 12 147 158 147 167 0.86

4 13 2.3 2.8e+02 3.1 1.9 2 20 368 386 367 388 0.90

5 13 0.00019 0.023 16.0 0.6 1 23 422 444 422 444 0.97

6 13 0.55 66 5.1 5.9 1 23 480 502 480 502 0.94

7 13 0.00037 0.043 15.1 0.7 2 23 513 534 512 534 0.96

8 13 0.0031 0.36 12.2 1.0 1 23 545 567 545 567 0.97

9 13 9.3e-07 0.00011 23.3 1.1 1 23 573 595 573 595 0.97

10 13 0.02 2.3 9.7 1.4 1 23 601 625 601 625 0.94

11 13 0.0031 0.37 12.2 1.8 1 23 631 653 631 653 0.97

12 13 0.00015 0.018 16.3 6.8 1 23 657 679 657 679 0.98

13 13 0.38 44 5.6 0.6 1 23 686 709 686 709 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.8	2.1e+02	3.5	0.2	6	21	10	25	5	26	0.84
2	13	0.03	3.5	9.1	0.2	2	20	32	50	31	52	0.92
3	13	7.2	8.5e+02	1.6	2.0	1	12	147	158	147	167	0.86
4	13	2.3	2.8e+02	3.1	1.9	2	20	368	386	367	388	0.90
5	13	0.00019	0.023	16.0	0.6	1	23	422	444	422	444	0.97
6	13	0.55	66	5.1	5.9	1	23	480	502	480	502	0.94
7	13	0.00037	0.043	15.1	0.7	2	23	513	534	512	534	0.96
8	13	0.0031	0.36	12.2	1.0	1	23	545	567	545	567	0.97
9	13	9.3e-07	0.00011	23.3	1.1	1	23	573	595	573	595	0.97
10	13	0.02	2.3	9.7	1.4	1	23	601	625	601	625	0.94
11	13	0.0031	0.37	12.2	1.8	1	23	631	653	631	653	0.97
12	13	0.00015	0.018	16.3	6.8	1	23	657	679	657	679	0.98
13	13	0.38	44	5.6	0.6	1	23	686	709	686	709	0.95

Sequence Information

Coding Sequence: ATGGAGAGCGTCGCATGCCCACTTTGCTGTGAGGATAGGTTTTCCAACCAAGACTTATTGAAATATCATTTGTTAAGTTTGACCACTAACATTCAGTGTCCCTTCTGTGGAAAACAGTGCGATGACATTAACTCATTAGTCGTTCATTTGGATAAGATTTGCAACGATAAAGAAGATGAAGTTGATAAATCCATGCACGACAACAATGAAATGATCGTCGTATATCCAGATGATGACGAACCAGAACCAGAGAACGAAATTGGGGAATTTGATAATCTTGTGGAAGAAGAGGATTATCAGAATGATGAACAGCAAACTGATGCTGATGAAGAAACTGGAGTTAAGAAATTTATTGAAGAATTTACTATTGATGATACAAATAAAATGTCACGACCGCCAGAAACAACAGAAACAGAAATTCTCGAAGAACCAAATCCTTTTCATTGTTCTGAATGTAATATACATTTTCCATCAATTCAGGAACATATAAATAATTGTCACAAAGGTCAAGATATTGTGTTTCAGGTAATTGAAGATGACCTCAATAATGCATTAAAGGACAGTCCTGGTACTATTGGCGAACAGATTCCTCAAATGGGAACTTGGATCAAATGGGGCAATGGCTACTTTTATACAAACCATAATGATGTGGCAATGAAACAATTGGCTGATATTAAGTCGAAAGAAATAACAACTTTGAAAACTATTCCAGAAGACTTAGTTGAACCAAGAGATGAAAATATAAAAATTAAAAGCAACTTGCATAAAAATGTTACCAGCACATTTTCTGCCACTATTTATTCAAATCATTGCATCACTGATTCATATGGCGATAGGTATTTTGATACTCCTGTTTATTTACTTCATCAAGTTACTGATAAGGTTAATGATTATTTCCAAGTTGAAGCTCGTAAATTGAGTTTCAAAAAACGAATCCGTGTTATACGATTAAAATCTAATACAGATACATTTCATATTGAGCAAATATTATTTCAAAATAAACCCACTAATTGCAACATAATTCCAATATTAGAAAAAGCATCTGAATGTAATGAATACTCTCAAAAAGAAAAATTGGAGGATTGTTTATTGTTAATTTGGAAGTGCGTAGCATGTAATGTAAAATCTGACCATTGGTCTAAGTTAAACAAACATAACTGCACAGAAGATGATGCAATGACACCCAAATCTAAAAAAAATGTTGAAAACAAAAATGCAGCCATCCGAAACAATAGTCGCACAATTCCTAATGTTCGATCAAAGCATATTTGTCCACATTGTGGCGGAGAATTTGATTCAGAAGGTTATTTAAGAACACATCTTATGGTACACATAAATGATTCAAACAAATGTCCGTTTTGTGATCAACCAGTAGCACCTGAAATGATGGACACACATTTAATTGCTCATCAAAATCCAGAATTTTCTAACTTAAAGTTTCTATGCAATATATGCAATAAATGTTATGATTCCGAATTTCGTCTCCGGTGTCATCAAAGAGCACACGAAATGCGACGTAAACCTCGTGAAATATTGGTCTGTGATGTTTGCAATGCTCAATTTAATGATAAAAACTCTTTAAAACATCATGCCATCACACATATTGAACCCCCTGAACGTTTACGACGATTACATGAATGTCGTTTCTGTGGAAAAACTTTTGTTAAACCTATTGAGAAAGTAAACCATGAAAGAGTGCATACAGGCGAGAAACCTTTTGCCTGTCCAGTATGTGGTCGTTGTTTCAGACTCAAAGATCTCGTACAAAAACATATGCGTGTACATACCAAAGAACGCCCTTATAAATGCCGTCATGAAGGTTGTGATAAAACATTCAGTGCATCAAGCAGTAGAGTCAATCACGAACAAGGCCATTCTGGTATCAAGCAATTTAAATGTTTTTATTGTCCTAGATATTTTAAGAATTGGGTGTCGAGAAGTAATCATGTCCAAGAGCATATGGTTCAGCATAAATGTGACATTTGTGATCGTTCATTTGTGTCATTTTGTAATTATAAGAAACATTTGAAAATGCACGCAGATGGACGGCTCAAATTCAATTGTTTACTATGCCGTCAAGCATTTGGAAGACAACTGTTTTTAGATACCCATCTAAGTAGGGAACATGAAATGAAATCAAATAAAGAAGAAGACATAACCGAATAG
Protein Sequence: MESVACPLCCEDRFSNQDLLKYHLLSLTTNIQCPFCGKQCDDINSLVVHLDKICNDKEDEVDKSMHDNNEMIVVYPDDDEPEPENEIGEFDNLVEEEDYQNDEQQTDADEETGVKKFIEEFTIDDTNKMSRPPETTETEILEEPNPFHCSECNIHFPSIQEHINNCHKGQDIVFQVIEDDLNNALKDSPGTIGEQIPQMGTWIKWGNGYFYTNHNDVAMKQLADIKSKEITTLKTIPEDLVEPRDENIKIKSNLHKNVTSTFSATIYSNHCITDSYGDRYFDTPVYLLHQVTDKVNDYFQVEARKLSFKKRIRVIRLKSNTDTFHIEQILFQNKPTNCNIIPILEKASECNEYSQKEKLEDCLLLIWKCVACNVKSDHWSKLNKHNCTEDDAMTPKSKKNVENKNAAIRNNSRTIPNVRSKHICPHCGGEFDSEGYLRTHLMVHINDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNICNKCYDSEFRLRCHQRAHEMRRKPREILVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCDKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHADGRLKFNCLLCRQAFGRQLFLDTHLSREHEMKSNKEEDITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136382;
90% Identity: iTF_00942195; iTF_01350324; iTF_00019709;
80% Identity: -