Basic Information

Insect: Sitobion miscanthi
Gene Symbol: -
Assembly: GCA_008086715.1
Location: Lachesis:17991666-17996752[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.28 1e+02 3.5 0.2 6 21 10 25 5 26 0.84

2 14 0.0047 1.7 9.1 0.2 2 20 32 50 31 52 0.92

3 14 0.98 3.6e+02 1.8 2.2 1 12 149 160 149 169 0.84

4 14 0.38 1.4e+02 3.1 1.6 2 19 370 387 369 390 0.91

5 14 1.7e-05 0.006 16.8 0.9 1 23 424 446 424 446 0.98

6 14 3.7 1.3e+03 -0.0 0.1 2 9 452 459 452 473 0.79

7 14 0.088 32 5.1 5.9 1 23 482 504 482 504 0.94

8 14 5.8e-05 0.021 15.1 0.7 2 23 515 536 514 536 0.96

9 14 0.00049 0.18 12.2 1.0 1 23 547 569 547 569 0.97

10 14 1.5e-07 5.4e-05 23.3 1.1 1 23 575 597 575 597 0.97

11 14 0.011 3.9 8.0 1.4 1 23 603 627 603 627 0.94

12 14 0.0005 0.18 12.2 1.8 1 23 633 655 633 655 0.97

13 14 2.4e-05 0.0088 16.3 6.8 1 23 659 681 659 681 0.98

14 14 0.21 77 3.9 0.6 1 23 688 711 688 711 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.28	1e+02	3.5	0.2	6	21	10	25	5	26	0.84
2	14	0.0047	1.7	9.1	0.2	2	20	32	50	31	52	0.92
3	14	0.98	3.6e+02	1.8	2.2	1	12	149	160	149	169	0.84
4	14	0.38	1.4e+02	3.1	1.6	2	19	370	387	369	390	0.91
5	14	1.7e-05	0.006	16.8	0.9	1	23	424	446	424	446	0.98
6	14	3.7	1.3e+03	-0.0	0.1	2	9	452	459	452	473	0.79
7	14	0.088	32	5.1	5.9	1	23	482	504	482	504	0.94
8	14	5.8e-05	0.021	15.1	0.7	2	23	515	536	514	536	0.96
9	14	0.00049	0.18	12.2	1.0	1	23	547	569	547	569	0.97
10	14	1.5e-07	5.4e-05	23.3	1.1	1	23	575	597	575	597	0.97
11	14	0.011	3.9	8.0	1.4	1	23	603	627	603	627	0.94
12	14	0.0005	0.18	12.2	1.8	1	23	633	655	633	655	0.97
13	14	2.4e-05	0.0088	16.3	6.8	1	23	659	681	659	681	0.98
14	14	0.21	77	3.9	0.6	1	23	688	711	688	711	0.92

Sequence Information

Coding Sequence: ATGGAGAGCGTTGCGTGCCCGCTTTGCTGCGAGGATAGGTTTTCCAACCAAGACTTATTGAAATATCATTTGTTAAGTTTGACCACAAATATTCAGTGTCCCTTTTGTGGAAAACAGTGCGATGACATCAACTCATTAGTCGTTCATTTGGATAAAATTTGCAACGATAAGAAAGAAGAAGTTGATAAATCTATGCACGAAAACAATGAAATGATCGTCGTATATCCAGATGATGATGAACCGGAACCGGAACCAGATAATGAAATTGGAGAATTCGATAATCTTGTGAGAGAAGAGGATTATCAGAACGATGAACGGCAAACTGATGCTGATGTAGAAACTGGAGTTAAGAAATTTATTGAAGAATTTACTATTGATGATTCAACTAAAACGTTACGACCACCAGAAACAACAGAAACAGAAATTCTCGAAGAACCAAATCCTTATCACTGTTCTGAATGTAATATACATTTTCCATCAGTTCAGGAACATATAAATAATTGTCACAAAGGTCAAGATGTTGTGTTTCAGGTAATTGAAGATGACCTCGGTAATGCATTAAAGGACAGTCCTGGTACCATTAGCGAACAGATTTCTCAGATGGGAACTTGGATCAAATGGGGCAATGGCTACTTTTATACAAACCATAAAGATGTGGCAATGAAACAATTGGTTGATATTAAGTCAGAAAAAACAACAACTTTAAAAACTATTCCAGAAGATTTAATTAAAACGAAAGATGAAAATATAAAAATTAAAAGCAACGTGCATCAAAGTTATACCAGCAAATTGTCTGCCAATATTTATTCAAATCATTGCATCACTGATTCATATGGCGATCGGTATTTTGATATACCTGTTTATTTACTTCATCAAGTTACTGATAAGGTTAATGATTATTTCCAAGTTGAAGCTCGTAAATTGAGTTTCAAGAAACGAATCCGTCTTATACGATTAAAATCTAATACAGATCAATTTCATATTGAGCAAATATTATTTCAAAATAAACCAACTAATTGCAAAATTATTCCAATATTAGAAATAGCATCTGAATGTAGTGAATACTCTCAACTAGAAAAATTGGAGAATTGTTTATTGTTAACTTGGAAGTGTTTAGCATGTAATGTAAAATCTGACCATTGGTCTAAGTTAAACAAACATAACTGCATAGAAGATGATGCAATGGCACCCAAATCTAAAAAAAATGTTGATAACAAAAATCCAGCCATCCGAAACAATAGTCGTACAATTCCTAATATTCGATCAAAGCATACTTGTCCACATTGTGGCGGAGAATTCGATTCAGAAGGTTATTTAAGAACACATCTTATGGTACACATAAATGATTCAAATAAATGTCCGTTTTGTGATCAACCAGTAGCACCTGAAATGATGGACACACATTTAATTGCTCATCAAAATCCAGAATTTTCTAACTTAAAGTTTCTATGCAATATATGCAATAAATGTTACGATTCAGAATTTCGTCTCCGGTGTCATCAAAGAGCACACGAAATGCGACGCAAACCTCGTGAAATATTGGTCTGTGATGTTTGCAATGCTCAATTTAATGATAAAAACTCTTTGAAACATCATGCCATCACACATATTGAACCCCCTGAACGTTTACGTCGGTTACATGAATGTCGTTTTTGTGGAAAAACTTTTGTTAAACCTATTGAGAAAGTAAACCATGAAAGAGTGCATACAGGCGAGAAACCTTTTGCCTGTCCAGTATGTGGTCGTTGTTTCAGACTCAAAGATCTCGTACAAAAACATATGCGTGTACACACCAAAGAACGCCCTTATAAATGTCGTCATGAGGGTTGTGAAAAAACGTTCAGTGCATCAAGCAGTAGAGTCAATCACGAACAAGGCCATTCTGGCATTAAGCAATTTAAATGTTTTTATTGTCCTAGATATTTTAAGAATTGGGTGTCGAGAAGTAATCATGTTCAAGAGCATATGGTTCAGCACAAATGTGACATTTGTGATCGTTCATTTGTGTCATTTTGTAATTATAAGAAACATTTGAAAATGCATGCAGATGGACGGCTCAAATTCAGTTGTATACTATGCCGTCAAGCATTTGGAAGACAACTATTTTTAGATACCCATATGAGTAGAGAACATGAAATCAAATCAAATAAAGAAGACAACATAACTGAATAG
Protein Sequence: MESVACPLCCEDRFSNQDLLKYHLLSLTTNIQCPFCGKQCDDINSLVVHLDKICNDKKEEVDKSMHENNEMIVVYPDDDEPEPEPDNEIGEFDNLVREEDYQNDERQTDADVETGVKKFIEEFTIDDSTKTLRPPETTETEILEEPNPYHCSECNIHFPSVQEHINNCHKGQDVVFQVIEDDLGNALKDSPGTISEQISQMGTWIKWGNGYFYTNHKDVAMKQLVDIKSEKTTTLKTIPEDLIKTKDENIKIKSNVHQSYTSKLSANIYSNHCITDSYGDRYFDIPVYLLHQVTDKVNDYFQVEARKLSFKKRIRLIRLKSNTDQFHIEQILFQNKPTNCKIIPILEIASECSEYSQLEKLENCLLLTWKCLACNVKSDHWSKLNKHNCIEDDAMAPKSKKNVDNKNPAIRNNSRTIPNIRSKHTCPHCGGEFDSEGYLRTHLMVHINDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNICNKCYDSEFRLRCHQRAHEMRRKPREILVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCEKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHADGRLKFSCILCRQAFGRQLFLDTHMSREHEIKSNKEDNITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136382;
90% Identity: iTF_01038724;
80% Identity: -