Acrc001603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis craccivora
Gene Symbol
PAXBP1
Assembly
GCA_009835225.1
Location
VUJU01006077.1:2972-8112[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.32 4.8e+03 -2.4 0.0 54 87 337 366 329 377 0.76
2 2 6.5e-28 9.8e-24 85.1 6.0 4 272 534 743 531 745 0.91

Sequence Information

Coding Sequence
ATGGCTATGCAATTTAAGAAGCCTAAACGAAACCTTCGTGTCAGAGACTCTGATGGTTTTCCTGACAatgaaaatgaagaaaaaatggATGTGGATACAGTACTGAAGCTACCAAAACCACAAAAAGAAAAGACAACGAAGAAAGTTAACACCTTGAGCTTTGGTGATGAGTTAAATGAATGTGATGATGGCGAAGaattcaaagtaaaaaaatcatcatacagtaaaaaaataaaaaagcaaatGAATAGAGAAAAATTGGGTCGAGATAAGGTAGAAAATggcaaaaaatcaaaaactattgCTGATACAGTGAAACCTATTAATgatgaaaaacaaacaaatttcaatACTGAACCTGTTGAAAAGGAAATAATGCTTACAGGCCGAGCTGCTGAAATGGCCGGCTATGTATCATCAGATGAAGAACCTGATTCATACAGTTCATCTCATCGATTTTCTAATCCTGACCAAgttaaaatactattgaaaaAGGGACAAATTCCTGATGCAGCATTAATTCATGCTGCTCGAAAACGAAGACAGCAAGCACGTGATTTGGGAGAAGATTTTATTCCAATATCATCACAATCTCATAGTGAATCAAAAGTTGATAATGAACAAACAACTAGTCGACGTTTAACCCGAGAAGAAGATGAATTAGAAGATAGTGATGATGatggtattattgttatgtctGGAATTGTTAGTCAAGCTGAGGATCGGAAAAAAAGTTTACATAGTACAATGActgacCACACTAATAATACTGAGTTTGAAGATCCTGATGAACTTGATGAAGATAATGAATGGGAAACTCAACAAATAAGAAAAGCAGTAACAGGCTCACAATTAGCTGCTGCACAACAGGAATCTGCTGGTATGGCTgctttgtacaataatatggttataCAGGAGCAAGCTATGATGCCAATATTAATGAACCAAAAACCTCGATTCTCCGATTCATATGCTCCACAAGGATTGATGTCTACAATGAGCCcagatgatataataaataaaacaaaagaaatattgAATGAACTGAAAGAAAATCGAAATCCAGatcagaaatattttgaagatatGATAAACGAAATACCAGAGATTAAGAATAAAGttgaattgttaaaaattaatgttcccGAGTTGGATGATTGTTTTCAGTTTTATCAAGATTTGCGTGGGTACGTCACTGATCTGGTAGAATGTCTTGATGAAAAGattccTTTACTTGTGGGATTAGAACAACGAATATCTAAGTTGTATGAAAAAAGACGTTTAGATTTGATAGCCAGACGTAGACAAGATGTCCGAGATCAAGCGGAAGAATCTTCAACTAAtaAATTAGGAACTTCAACAACACATACAAGATCTGAAGAACAGCAAAGAAGAGCTGCAGAGCGTGAAGGTCGTCGTATCAGACGTATGAGAATGAGAGAAATAAAAGCAATAAGTAAACACGCAGATGGAATGTCTAGTGATGAAGAAGTTCCTGAAACAGATGCGTCAGCATTTAGAAATCAATtagagCTTATTAAAAGTGACTCAAACATGTTATTGGATGATGTTCTTGAGGAATTTGCATCAGTTGATTTAGTGTTAAAACATATGTTAGAATGGAAAAACAAGTATTTGGAAAGCTATATTGAAGCATATGTTAATGTGTGTTTACCGAAATTAGTGGGACCTTTTGTTCGTATAGAAATGCTTACATGGAATCCATTAGAGgatGATCTCAAGTTTGAAGATATGTTTTGGTATAAAAGTATGCAAAAGTATACAATGAAaggaaataacaatattgatcAGTTGACAAAAGATGTTGATTTAGAACTAATCcccaaaataatagaaaaagttGTGCTCATTAAAATTGAtcaaatggTTACAAGTCAGTGGGATCCATTGTCatcaaaacaaacaaaacatatttgtaaTCTTGTCAAGTATATACTAGATGTGTACCCAACTATTGATCCagatagtaaattattgatgatGTTATTGAACAATTTAGTGGACAGAATACGAGATGCTGTCGATTATGATGTGTTTATTCCAATATCTTCTAGACAAGTAATGAATACTGGTCgtatgaatgtattttttcaaagGCAGTTTAACATGgctgtaaaattatttggaaatattttaagttggcATCGTATCATTGAAGATGTAGTGATAATAGATTTAGCTATAAACCAAATACTTAACAGATATTTGCTAACATCTGTTCGAACATTACAGCCACTAGAagctattttgaaaattacaatgATTGCTCGTATGTTACCTAATTCATGGTTATCGTATGGAAACACTACCCCTAAAGAATTAACACCCTTTTTAAACCAGTCAAAATTAGTTTCAATGGAAATAGACAAGTCACATCCTCAGGCAAAACTTGCCCTGGATAAACTCAACGAAGTCCTCAAACTATGA
Protein Sequence
MAMQFKKPKRNLRVRDSDGFPDNENEEKMDVDTVLKLPKPQKEKTTKKVNTLSFGDELNECDDGEEFKVKKSSYSKKIKKQMNREKLGRDKVENGKKSKTIADTVKPINDEKQTNFNTEPVEKEIMLTGRAAEMAGYVSSDEEPDSYSSSHRFSNPDQVKILLKKGQIPDAALIHAARKRRQQARDLGEDFIPISSQSHSESKVDNEQTTSRRLTREEDELEDSDDDGIIVMSGIVSQAEDRKKSLHSTMTDHTNNTEFEDPDELDEDNEWETQQIRKAVTGSQLAAAQQESAGMAALYNNMVIQEQAMMPILMNQKPRFSDSYAPQGLMSTMSPDDIINKTKEILNELKENRNPDQKYFEDMINEIPEIKNKVELLKINVPELDDCFQFYQDLRGYVTDLVECLDEKIPLLVGLEQRISKLYEKRRLDLIARRRQDVRDQAEESSTNKLGTSTTHTRSEEQQRRAAEREGRRIRRMRMREIKAISKHADGMSSDEEVPETDASAFRNQLELIKSDSNMLLDDVLEEFASVDLVLKHMLEWKNKYLESYIEAYVNVCLPKLVGPFVRIEMLTWNPLEDDLKFEDMFWYKSMQKYTMKGNNNIDQLTKDVDLELIPKIIEKVVLIKIDQMVTSQWDPLSSKQTKHICNLVKYILDVYPTIDPDSKLLMMLLNNLVDRIRDAVDYDVFIPISSRQVMNTGRMNVFFQRQFNMAVKLFGNILSWHRIIEDVVIIDLAINQILNRYLLTSVRTLQPLEAILKITMIARMLPNSWLSYGNTTPKELTPFLNQSKLVSMEIDKSHPQAKLALDKLNEVLKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499641;
90% Identity
iTF_00940493;
80% Identity
-