Aobl005112.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014428.1:20681010-20681474[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 8.9e-09 35.4 0.0 1 35 23 58 23 64 0.92
Sequence Information
- Coding Sequence
- ATGACCCATTTATTTTTGTCCCAATTAGATTATCCCACATTATTAAAGCTTAAAACACCGACATGGACTCAAGAACAACTGAAAGAGGCTATCGAAGCTGTGGTAACGCAGAAAATGCGTTTCACGCAAGCCTCGACAAGGTACGGAATACCAAAGGGCACGCTTTACGACAACATCCTAGGCAAATCCAAAAGGATGGCGGTCCTAGAAGAAGCCGGGCTGACAGCCGAAGAAGAGAACGCCGTTCTCGAGTTTTGCTGCGACGTTTCAGTCTCACCTTACAATAGAAGAACAAAGAAATCTTTGAAGGCTGTTTTAGGATACGTGGAGAAGTTGAGGAGAATAAGAGACCCGGAATTCTTGTTCACGGGACTGTCGGGGTTCAGATGGTGGTGGGCATTTTGTAAAAAGCATAGTATTGTATCTTTACACTACGAGAATAATATTTCTAGAAACTCTCTATAG
- Protein Sequence
- MTHLFLSQLDYPTLLKLKTPTWTQEQLKEAIEAVVTQKMRFTQASTRYGIPKGTLYDNILGKSKRMAVLEEAGLTAEEENAVLEFCCDVSVSPYNRRTKKSLKAVLGYVEKLRRIRDPEFLFTGLSGFRWWWAFCKKHSIVSLHYENNISRNSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047079; iTF_00056484; iTF_01022137; iTF_01283304; iTF_00458798; iTF_00735436; iTF_00910496; iTF_00065999; iTF_01498805; iTF_00330484; iTF_00244149; iTF_00443935;
- 90% Identity
- -
- 80% Identity
- -