Pser021853.1
Basic Information
- Insect
- Pyrochroa serraticornis
- Gene Symbol
- -
- Assembly
- GCA_905333025.1
- Location
- HG995154.1:32997762-33003710[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-11 3.2e-08 33.5 0.0 1 35 39 74 39 79 0.92
Sequence Information
- Coding Sequence
- ATGGCGTGCGTGTCGCGGGCCAAGTTATTGGAGTCTTCTCATGCTTGGCTCGGCGCCTCCACGTCTTCAATAGCCGATTATCCGACTTTACTAAAACTAAAAACGCCAACGTGGACCCAAGAACAGCTAAAAGAAGCCATAGATGCCGTAGTGAAACAAAAAATGCGTTTTACGCAAGCTTCCGCTAAATACGGGATACCGAAGGGAACTTTGTACGATAACATCCTAGGAAAATCGAAACGAATGGCGGTATTAGAAGAAGCTGGTCTTTTACCTGCTGAAGAAGCCGCCGTTTTGGAGTTTTGCTGTGACGTTTCCATTTCGCCCTACAACCGACGTACCAAGAAATCTCTAAATTCGGTACTGACGTACGTGGAGAAGTTGAGACGTGCTAGAGATCCGGAATTTATGTTTACTGGACTTTCCGGTTTCCGGTGGTGGTGGGCGTTTTGCAAAAAACACAATATCGTTTCTTTGTATTACGAGAGCAATAACGGGTCGATGAATAATACTCTATGA
- Protein Sequence
- MACVSRAKLLESSHAWLGASTSSIADYPTLLKLKTPTWTQEQLKEAIDAVVKQKMRFTQASAKYGIPKGTLYDNILGKSKRMAVLEEAGLLPAEEAAVLEFCCDVSISPYNRRTKKSLNSVLTYVEKLRRARDPEFMFTGLSGFRWWWAFCKKHNIVSLYYESNNGSMNNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130427;
- 90% Identity
- iTF_01409899; iTF_00987054; iTF_00813638; iTF_01022137; iTF_01480794; iTF_00870492; iTF_00423718;
- 80% Identity
- -