Avir000975.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000011:821115-857022[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 5.4e-08 32.4 0.0 1 35 35 70 35 75 0.92
Sequence Information
- Coding Sequence
- ATGCCGGCAAAACTTCTTGAATCCTCACATGCCTGGCTTGGTGCTTCCACATCTTCTATCGCCGATTTTCCGACTTTGCTAAAACTAAAAACACCAACATGGACTCAAGAGCAACTAAAAGAAGCCATCGATGCGGTGGTCACACAAAAAATGCGTTTCACGCAAGCGTCAGCCAGGTACGGTATACCAAAAGGAACTCTTTACGATAATATACTAGGAAAATCGAAACGAATGGCAGTACTCGAAGAAGCTGGATTAACATATGCTGAAGAAATGGCAGTACTCGAGTACTGCTGTGATGTTTCGGTTTCACCGTATAATAGAAGAACGAAGAAATCGCTAAAAGCTGTTTTAGATTTTGTTGAACGGTTAAGACGATTAAGAGATCCTGAATTTATGTTTACTGGTCTATCTGGTTTTAGATGGTGGTGGGCTTTTTGTAAGAAACATAGTATTGTTTCGTTATATTATGAAAATAATGGGAATATTGAGATAAACAAGACTTTTTAA
- Protein Sequence
- MPAKLLESSHAWLGASTSSIADFPTLLKLKTPTWTQEQLKEAIDAVVTQKMRFTQASARYGIPKGTLYDNILGKSKRMAVLEEAGLTYAEEMAVLEYCCDVSVSPYNRRTKKSLKAVLDFVERLRRLRDPEFMFTGLSGFRWWWAFCKKHSIVSLYYENNGNIEINKTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130427;
- 90% Identity
- iTF_01047079;
- 80% Identity
- -