Ntra034429.1
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- -
- Assembly
- GCA_963243735.1
- Location
- OY725349.1:1166497-1166979[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-10 1.2e-07 32.8 0.0 1 35 21 56 21 62 0.93
Sequence Information
- Coding Sequence
- atgttttgttttcttcaaATAGATTTTCCGACTTTGCTAAAGTTAAAAACCCCAACATGGACTCAAGATCAACTAAAGGAAGCCATAGACGCCGTGGTAACTCAAAAAATGCGTTTCACTCAAGCTTCAGCCAGATACGGTATTCCTAAAGGTACTCTCTACGACAACATCCTTGGAAAATCGAAGCGGATGGCAGTATTAGAAGAAGCGGGATTGACGTATCCGGAAGAAATGGCAGTACTGGAGTACTGCTGCGACGTTTCAGTATCGCCGTACAACAGAAGGACGAAGAAGAGTTTAAAAGCTGTTTTGGATTTTGTTGAAAGGTTAAGACGAATGAGAGATCCAGAATTTATGTTTACTGGATTGTCTGGATTTAGGTGGTGGTGGGCGTTTTGTAAAAAACATAGCATTGTTTCgttatattatgaaaataacggTAATATTGATATTAAACCATTTAATGCTAAATCTGAATTCTAA
- Protein Sequence
- MFCFLQIDFPTLLKLKTPTWTQDQLKEAIDAVVTQKMRFTQASARYGIPKGTLYDNILGKSKRMAVLEEAGLTYPEEMAVLEYCCDVSVSPYNRRTKKSLKAVLDFVERLRRMRDPEFMFTGLSGFRWWWAFCKKHSIVSLYYENNGNIDIKPFNAKSEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130427;
- 90% Identity
- iTF_00056484; iTF_00458798; iTF_00735436; iTF_00910496; iTF_00330484;
- 80% Identity
- -