Basic Information

Insect: Apamea epomidion
Gene Symbol: -
Assembly: GCA_947507525.1
Location: OX382254.1:5970574-5978836[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.21 15 6.7 4.2 1 23 386 407 386 407 0.91

2 18 0.027 1.9 9.5 2.1 2 23 478 499 477 499 0.96

3 18 0.00026 0.018 15.8 1.8 1 23 503 525 503 525 0.98

4 18 0.042 3 8.9 1.2 1 23 530 553 530 553 0.91

5 18 0.017 1.2 10.1 0.5 2 23 561 583 561 583 0.94

6 18 0.0016 0.12 13.3 2.2 2 23 591 612 590 613 0.94

7 18 0.00024 0.017 15.9 0.2 2 23 620 641 619 641 0.95

8 18 6.6e-05 0.0047 17.7 0.3 1 23 647 669 647 669 0.98

9 18 8.1 5.7e+02 1.7 1.2 1 23 761 784 761 785 0.82

10 18 0.63 45 5.2 0.4 1 23 809 832 809 832 0.95

11 18 0.073 5.2 8.1 2.4 1 23 854 876 854 876 0.97

12 18 4.8e-05 0.0034 18.1 1.3 1 23 880 902 880 902 0.96

13 18 0.025 1.8 9.6 0.7 1 23 907 930 907 930 0.91

14 18 0.0045 0.32 11.9 0.1 2 23 937 959 937 959 0.94

15 18 2.4e-05 0.0017 19.1 3.1 1 23 966 989 966 989 0.96

16 18 0.0072 0.51 11.3 3.7 1 23 995 1017 995 1017 0.98

17 18 2.3e-06 0.00016 22.3 2.1 1 23 1023 1045 1023 1045 0.98

18 18 0.009 0.64 11.0 4.4 3 23 1053 1074 1052 1074 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.21	15	6.7	4.2	1	23	386	407	386	407	0.91
2	18	0.027	1.9	9.5	2.1	2	23	478	499	477	499	0.96
3	18	0.00026	0.018	15.8	1.8	1	23	503	525	503	525	0.98
4	18	0.042	3	8.9	1.2	1	23	530	553	530	553	0.91
5	18	0.017	1.2	10.1	0.5	2	23	561	583	561	583	0.94
6	18	0.0016	0.12	13.3	2.2	2	23	591	612	590	613	0.94
7	18	0.00024	0.017	15.9	0.2	2	23	620	641	619	641	0.95
8	18	6.6e-05	0.0047	17.7	0.3	1	23	647	669	647	669	0.98
9	18	8.1	5.7e+02	1.7	1.2	1	23	761	784	761	785	0.82
10	18	0.63	45	5.2	0.4	1	23	809	832	809	832	0.95
11	18	0.073	5.2	8.1	2.4	1	23	854	876	854	876	0.97
12	18	4.8e-05	0.0034	18.1	1.3	1	23	880	902	880	902	0.96
13	18	0.025	1.8	9.6	0.7	1	23	907	930	907	930	0.91
14	18	0.0045	0.32	11.9	0.1	2	23	937	959	937	959	0.94
15	18	2.4e-05	0.0017	19.1	3.1	1	23	966	989	966	989	0.96
16	18	0.0072	0.51	11.3	3.7	1	23	995	1017	995	1017	0.98
17	18	2.3e-06	0.00016	22.3	2.1	1	23	1023	1045	1023	1045	0.98
18	18	0.009	0.64	11.0	4.4	3	23	1053	1074	1052	1074	0.97

Sequence Information

Coding Sequence: ATGTCGGTGGAAAAAGCTGAGATAGAGACGTTTTTCGGTAGATGTAGGTGTTGTCTCTCCTATGGCTACTTAAAAAACATGTGGGCAGAACATCAATTTGAAGGAGAAGCAGAAATCTACGGCGAGATGCTTGTCCAATGTTTTGCGCTGACTTGGGATCATTCGGAGGACTCGATGGAACAAGATCAGATATGTGAGCAGTGCGTCTGTCGGTTGCGCGATGCTAGTGACTTTAAGAGGGTGGTCTTAGAATCACAAGCAGAGCTGTTCCAGCAGATAGATGCTGAAAATGAGTTGAGCATCAAAGAAGAAAGACTAGATGAGGAATACCTCATAGAGTACAAACCTCCTGACAATGAAGACACTGCGGACACTATGTACGCTGACACAGAATATACTATGGACACCGCTGACACTATGACGAGTGTCAAAGATGAGACAGAGTATGAGGAGGTTGAGTATTTGGAAGAAGAAGACGCTGGTGGAGCGAATGATCCTGTGGATACTGACTCCTCACAACCAACAGATCATTTAAGACCCGCAAAACGGCGAAAGCAACCTCGTAAACAAGACACAGATGATGAGGAAGCGCCGAAACGTAAATGGCCCAAAAAGCTGCCCAAATCGGAACGGCACAGGACTTACAAACAATACTCCGAGGTTGATCTACGCAAATGTTTGGAAGAAGTTAGGAACAATGTACTGACGGCTGCTGAAGCGGCTTTGAAGTATGATATACCGAAGAAGACTATTTGTGCCAAGATCAAAGTGGATCCTAACGATGTCGGGACAGACATCCAGAACTCTATAAACAACACAACTAGCCGCGAAACTGTGACAACGAGCCAAATAAAGGTACCCATACTATCACATGAAGAGACTATTCAGACGGACACAGATACAGAAAACCAGGATATGATAAACACGTACCAACTATCACTCATAGAAGCAAAAAAGGCAGAATCAGAGGCAGAAAGCCAGGATTCACCAATCGAGTACACACTATCACACGAAAAGGCGAAAATGACAAACTCGGACACAGAAAGCCAGGGAGAAGTACCAAACAAGATCCAAATGCTTAAACACAAGAATAACCTCAAAATGATCCTGAAGTACTCAAACGCAACATTAATTAAAGGAAATTCAGCCGCAGGATACTCCTGCTGGTTTTGCGACAAGCATTTTAGTCCTGTAAAGCTAAAAAAGCATAATTTTCAACACGGAGATGTGTACGATGATGCTATAAAAGTAAAATGCGTTTCACATTTAATTATAAAACTTGATGTTACTGGACTTAAATGTAGGCTATGTGAGGATGAAATCGACAGTCTTGAAAAACTGATGGACCATTTCCAAGAAATTCATAATAAAACTATTTATACGGACATAGACAACCATTTCATACCTTTTAAATTCGACACGGACAAGTTACAATGCGTTATTTGTACAACGGAGTTCAAATATTTCAAACTGCTCTCAGAGCATATGTGTGAACATTACAGCAACTACAAATGTCCGGAATGCGATCGTCTCTTTATAAATAAACAATCAATGCAAACACATCGATACAGACATAAGAAAGGAGAATACAAATGTTCACAATGCCCAAAAATCTTCGACAGTCTCATGAAAATACGTGAACACGAACACGTAACTCACAAACTGTCGAACAAGAAGAGAAAGTGTGGCTTCTGTGACGAGAAATTCTCGTCAGCAGAATTAGTAAAGAATCACGAAGCTAAAAAGCATGGCGTCGCCCGCTCTAGGCTTACCTGTGAAGCTTGCAACAGGCGTTTCGCTTCACAAAAAAGTCTTGCAGTACATAAGAAGAGACACCATCTAGTAATACGTCCATTGGAATGTGAAACTTGTGGAAAAGGGTTTTATACGCGACAGGAACTCAACTGGCATTCAGTCACCCATACAAAAACCAAAGAATTTCAGTGTAATCTATGTGATAACTCGTTTGGAACGAAACCTGCGCTAACTCAGCATTTAAGGGCACATAAAGATGTCCAGATTGACAATACAACGAAATCCAACAATATAAAGCGTCTAAGGAAAAGACCTACCTCTGAAGTCGAAGAGACTAAAGTTACAGAAACAAAAAAAGATCGCAAGCCGAGCGAAGCGAACTTAAACTTCCAAGAAAGAGTCGAAAATATAAAAGAACGTTCCAATCCAGATGATCAACGTTTTATGTATAAACACAAGGCCAATATAAAAGCTATATTACAACATTCTAACGCGACACTCATTAAAACGTACGGGAGAGACGGATATTCATGCAATTTCTGCGACTTTCAGGCCGAAAAACCGTTTGTACTAAAGCAGCATAATCTGAAGAAACACACCGATGTAGGAGGCGAGGCAATCAAAACAAAATATGTATCAGATTTGATCTTAAAATTAGATACTACAGATTTTAAGTGCAAGTTATGCAAAGAACCAATGAACACTTTAGAAGAATTCATGGGACATCTTAGTAAAATACACTCCAAACTTATTTACACTGACGTCAAAAACTATATCATTCCTTTCAAATTCGATTCCGACGATTTTCGATGCTTCATGTGTGATAAAAATTTAAAGTTTTTCAAGCTTCTGTCCGAACATATGACTGAACATTACCGTAACTTTGACTGTCCGGATTGCGATCGTAGTTTCATCAATAAACAGTCAATGCAGACCCATACTTACAGACATAACAGGGGTATTTTCAAATGCTCTTATTGCTCCAAAGAGTTTGATTCTCGACCGAAACGGGCAGACCATGAAAGAGCCGTGCACATGGCCGGCAAGTATAGGAAATGTGCGTACTGTGACCGGCGATTCCCGACATGGGATGCCGTACTTGACCATGAGCTCAAGGCCCACGGGGCGCCGAAACCTCAACACACTTGTGAAGACTGTGGAAAGACTTATAGCAAACAAAGTGGTTTAACAATGCATAAAAATCGTTTCCACCTCTATAAGAAACCTCACAAGTGTTCCTTTTGCGAGATGGCTTTCTGCACGAAAGTGGAGTTGAGCTATCATGTTATAACTCATACGAAAACGAGGAATCATAGCTGTAAGATTTGTAACAAGTCGTTCGGTACGCCGATCACTTTGTCCCAGCATATGCGGACTCATGACGGTGTTAAAAAACTCCTTTGTGATTACTGTGACCGCCGGTTCTTACACAGAACTACTTTTAGAAGGCATATGAGAGAGACGCATGGAGAAATTGTTTGA
Protein Sequence: MSVEKAEIETFFGRCRCCLSYGYLKNMWAEHQFEGEAEIYGEMLVQCFALTWDHSEDSMEQDQICEQCVCRLRDASDFKRVVLESQAELFQQIDAENELSIKEERLDEEYLIEYKPPDNEDTADTMYADTEYTMDTADTMTSVKDETEYEEVEYLEEEDAGGANDPVDTDSSQPTDHLRPAKRRKQPRKQDTDDEEAPKRKWPKKLPKSERHRTYKQYSEVDLRKCLEEVRNNVLTAAEAALKYDIPKKTICAKIKVDPNDVGTDIQNSINNTTSRETVTTSQIKVPILSHEETIQTDTDTENQDMINTYQLSLIEAKKAESEAESQDSPIEYTLSHEKAKMTNSDTESQGEVPNKIQMLKHKNNLKMILKYSNATLIKGNSAAGYSCWFCDKHFSPVKLKKHNFQHGDVYDDAIKVKCVSHLIIKLDVTGLKCRLCEDEIDSLEKLMDHFQEIHNKTIYTDIDNHFIPFKFDTDKLQCVICTTEFKYFKLLSEHMCEHYSNYKCPECDRLFINKQSMQTHRYRHKKGEYKCSQCPKIFDSLMKIREHEHVTHKLSNKKRKCGFCDEKFSSAELVKNHEAKKHGVARSRLTCEACNRRFASQKSLAVHKKRHHLVIRPLECETCGKGFYTRQELNWHSVTHTKTKEFQCNLCDNSFGTKPALTQHLRAHKDVQIDNTTKSNNIKRLRKRPTSEVEETKVTETKKDRKPSEANLNFQERVENIKERSNPDDQRFMYKHKANIKAILQHSNATLIKTYGRDGYSCNFCDFQAEKPFVLKQHNLKKHTDVGGEAIKTKYVSDLILKLDTTDFKCKLCKEPMNTLEEFMGHLSKIHSKLIYTDVKNYIIPFKFDSDDFRCFMCDKNLKFFKLLSEHMTEHYRNFDCPDCDRSFINKQSMQTHTYRHNRGIFKCSYCSKEFDSRPKRADHERAVHMAGKYRKCAYCDRRFPTWDAVLDHELKAHGAPKPQHTCEDCGKTYSKQSGLTMHKNRFHLYKKPHKCSFCEMAFCTKVELSYHVITHTKTRNHSCKICNKSFGTPITLSQHMRTHDGVKKLLCDYCDRRFLHRTTFRRHMRETHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01441317;
90% Identity: iTF_00758481; iTF_00925069;
80% Identity: -