Basic Information

Insect: Apamea anceps
Gene Symbol: SEMA-2A
Assembly: GCA_951799955.1
Location: OX637514.1:9713947-9721267[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.7e-08 2.1e-05 24.9 0.0 2 42 156 197 155 200 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.7e-08	2.1e-05	24.9	0.0	2	42	156	197	155	200	0.87

Sequence Information

Coding Sequence: ATGCAAAACATAATATCAGGTGCCGCGGGCGCCCGCGGGGAGAGGGTCACAGGTGGCCCCGATGGTCGCAGCGTCGttaaaatttacataaagtctcaATCCACGACGACGGGCGCCGCTGCCCACCCCACGTTTATGCtacatttaTCCAACTTGACGCACCTGCCCCGTCATGAGTACGTGCCGGGCATAGGCATGGGTGTCGCCAAGTGCCCGTACGACCCTGCAGACAACTCCACAGCCCTGTGGGTGGAAAAGGGTAACCCTGGCAGCTTACCTGCGCTATACTCTGGCACTAATGCAGAGTTCACCAAGGCGGATACCGTCATCTTCAGAACGGATCTCCATAACTTGACGACTGGGCGACGCGAGTTTGCGTTTAAGAGGACCCTGAAATATGATTCAAAGTGGCTTGACAatatAATGGAggaaaacattaataataaaaaaaataggaaatatAATGAAGCGACACTGAGAACCGCTGTCGAAAATGTATTGGAAAATAATATGACTGTTTACCGCGCGTCTAAAGAATTCGGTATTCCATGGAGTACTCTTAAAGATAATGTTGGACGTGCGAAAGAAGATAGAGAAAATGGAATCAGCACTCAATTTATTAtgtcaaaaattggaagaccATTTTCACTACCGGTGGAATTAGAGCAAAAATTAGTTACATATATAATTGAAATGCAGGAGCTTGGTTTTGGCCTCACAGTAAATCAAATCCGAAAAATTGCCTTTTCGTTGGCAGAGGCCAAAAATCCTAAACATTGCTTTAGCTCAGAGAAAGGTTATGCTGGTTGGAACTGGTGGGTCAGTTTTAAACAGCGTTATGGCTTATCTTTGCGAACACCGGAGAATTTATCTGCTGGCCGAGCAAGTTGTTCGAATCCTGCTATCCTTGCTGACTTTTATGAAAAGTTAGAGAATACCCTAATTGAACATGATTTGGTACAATCCCCGGATAAAATATGGAATTGCGACGAGACAGGCTTAATGTTTGTTAACAAACCTTCCAAAATTGTTTCAAAGATTGGAAAACAGTATGTTTATAATCGTACATACGCTGAAAAAGGTACCACCACTACAGTTCTAGCTGCCATAAATGCTTCTGGATGTTTTCTTCCACCCATGACCATTTTCAAAGGGGTACGAAATATACCACAATTAAGTTCAGGATCTCTTCCAAATAGCTTAACACGACTTTCTCCAAAAGGTTGGATCAATGCAGACTTGTTTTTGGAATGGCTGGAGTTTTTCTCCAAAAACATTCCTCCAGCAAGGCCAGTTTTACTTATTATGGATTCACATGCCAGCCACGTTTCCCCGAATGTTTTAGCTTATgctaaatctaataaaataatattgttcacGATGCCTGCACATACAAGTCACATCCTACAACCACTTGACGTTGGGGTATTTCGGCCGCTTAAAGTAGCTTGGCGTGCTGAATTACAAAAGTACAAAACGCTACATCCAACCTCTGTGCCGACACGTTTTGACTTTCATAAATTTTTGAGTCCCGCATATGAAAGAAGTTTTACCCCATCAAATATTAGAGCAGGGTTTGAGAAGACAGGTATATACCCATTAAATAAAACTGCAGTGTGTCCAGAAGCAATCGCGCCCAGCCGACTTACAGACGTTATTTCCACGGAGCCAATACAAAACATTTTGATCGAAGAAGACCTTGAAGAGTCGATCCCTAACACCATAATAGAAACAGCTATCAGCGACCCCCTCAATGATTCGACATCACAAGGATTTACCACCGTAAGCAATACTGACTCAAATGTAACAAATCCTGCCAGTCCAATCCAGCCTTCTAAACCAAAGAAAATTGAGATTCACGACATTCTAATTCTACCTAAATGGACACCGAAAGCGAAAAAGCAGAATTCTAAAAGGACTGTTCCAAAAGCTATATGCTTAACACCTGTTCAGccgtcaacttccaaacttGAACCTAACAACACGCCACAACAGCCAAAGCAAAAGCCTGCACGAAAAATATCGGCATCTGCAACAGAGAAGGGAAAAGCTAAATCAGTCACTCAAAATAAGCGAGAAATGTCATTAGCAGAAGACGATTGGACATGTCACACATGTGATGGACTGTACTCCGATGATGTGTTGTCAAAAAACGGAGCCGAGTGGataacttgttctttttgcaCGTTACCATATCATGTGCATTGTCAAAGCCAAGATATCCCAAAAGGAAGCCAGCAACAAATTTTTATGTGCGACGCTTGCAGTGTCTCTGATAGCGATGAGGAATAG
Protein Sequence: MQNIISGAAGARGERVTGGPDGRSVVKIYIKSQSTTTGAAAHPTFMLHLSNLTHLPRHEYVPGIGMGVAKCPYDPADNSTALWVEKGNPGSLPALYSGTNAEFTKADTVIFRTDLHNLTTGRREFAFKRTLKYDSKWLDNIMEENINNKKNRKYNEATLRTAVENVLENNMTVYRASKEFGIPWSTLKDNVGRAKEDRENGISTQFIMSKIGRPFSLPVELEQKLVTYIIEMQELGFGLTVNQIRKIAFSLAEAKNPKHCFSSEKGYAGWNWWVSFKQRYGLSLRTPENLSAGRASCSNPAILADFYEKLENTLIEHDLVQSPDKIWNCDETGLMFVNKPSKIVSKIGKQYVYNRTYAEKGTTTTVLAAINASGCFLPPMTIFKGVRNIPQLSSGSLPNSLTRLSPKGWINADLFLEWLEFFSKNIPPARPVLLIMDSHASHVSPNVLAYAKSNKIILFTMPAHTSHILQPLDVGVFRPLKVAWRAELQKYKTLHPTSVPTRFDFHKFLSPAYERSFTPSNIRAGFEKTGIYPLNKTAVCPEAIAPSRLTDVISTEPIQNILIEEDLEESIPNTIIETAISDPLNDSTSQGFTTVSNTDSNVTNPASPIQPSKPKKIEIHDILILPKWTPKAKKQNSKRTVPKAICLTPVQPSTSKLEPNNTPQQPKQKPARKISASATEKGKAKSVTQNKREMSLAEDDWTCHTCDGLYSDDVLSKNGAEWITCSFCTLPYHVHCQSQDIPKGSQQQIFMCDACSVSDSDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121377; iTF_00121378; iTF_00121370; iTF_00121371; iTF_00121372; iTF_00121373; iTF_00121374; iTF_00121375; iTF_00121376; iTF_00071363; iTF_01503811; iTF_01503813; iTF_01155053; iTF_01155048; iTF_01155054; iTF_01156280; iTF_01503804;
90% Identity: iTF_00121377;
80% Identity: iTF_00121378;