Basic Information

Insect: Anticlea derivata
Gene Symbol: sox1a
Assembly: GCA_947579855.1
Location: OX388258.1:10739218-10740318[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1e-30 6.9e-28 97.0 2.4 1 69 88 156 88 156 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1e-30	6.9e-28	97.0	2.4	1	69	88	156	88	156	0.99

Sequence Information

Coding Sequence: atgttgacgatggagacggacctcaagggcggcagcctgcacgcgaacgtgccgcctcaccacgcgctacagcacggctacggctcgctgggcgcacttggcggcatgatgtcgctgccgcagcagcagccgctctcgcagcaccagccactgcaacaccaccaccaaatgccgcagcaccactcgcagcctccgcaacagcaccatcaacccccgaacaataacaacaacaacaccaacaagcagtccaacgcggaccgggttaagcgtccgatgaacgcgttcatggtgtggtcgcgcggccagcgcagaaagatggcatccgataaccccaaaatgcacaactcagaaatatctaagcggctcggtgcccagtggaaagacctctcggagtccgagaaaagaccgttcatagacgaggcgaagagacttcgcgcggtgcacatgaaggaacacccagattacaagtacaggccgaggaggaagacgaagacgctcgctaagaaacaggagaagtaccccctaggcggtggagcgctgctAGGGTCGGGTGAGGGTCAGCGTACCTCCGCACCCTCGCAACAACCGCgagacgtgtaccagatgactccaaatggatatatgcccaacggatacatgatgcacgaccccagtgcataccaacagcaggcttatggatacccgcgctacgatgtgtcacagatgcaGCAAGGCGGGTACGGTGGTGGCTATTACGGCGGGCAAGGCTCGCCGTACCTGCCGCAGCCCCCTTCACCGTCGGCGTACGGCATTGGACCCGGCTCTCCCGGCGGGTACGCGCTGCCACCTTCCTGCGCCTCGCACTCGCCTAGCGGCAGCTCCGCCAAGTCGGAGCCGGTGTCGCCGGGGCCGCCCGGCATGAAGCGCGAGTTCGTCTCACACGAACCTCCAGCGCAGATGAAGCGCGAGTTCGTGCATGGGCACCCACACGACCAGCTGCCGGGCATGAAGCGCGAGTACGGCGCGCACCAGCAGGACCTCAGCCACATCATCAACATGTACCACGTGCCCGACGAGCAGCGGTACGCGGCGGCCAACGAGCGCGCGATGCCGCTCATCTGA
Protein Sequence: MLTMETDLKGGSLHANVPPHHALQHGYGSLGALGGMMSLPQQQPLSQHQPLQHHHQMPQHHSQPPQQHHQPPNNNNNNTNKQSNADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAKKQEKYPLGGGALLGSGEGQRTSAPSQQPRDVYQMTPNGYMPNGYMMHDPSAYQQQAYGYPRYDVSQMQQGGYGGGYYGGQGSPYLPQPPSPSAYGIGPGSPGGYALPPSCASHSPSGSSAKSEPVSPGPPGMKREFVSHEPPAQMKREFVHGHPHDQLPGMKREYGAHQQDLSHIINMYHVPDEQRYAAANERAMPLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856610; iTF_00377091; iTF_00638627; iTF_00632740; iTF_01429029; iTF_00361608; iTF_01335918; iTF_01528275; iTF_01529174; iTF_00663063; iTF_00686327; iTF_00737464; iTF_00267167; iTF_00662207; iTF_01079042; iTF_00647975; iTF_00007995; iTF_00736603; iTF_00796497; iTF_00801830; iTF_01091914; iTF_01359735; iTF_00288032; iTF_01171454; iTF_00345793; iTF_01173259; iTF_00776705; iTF_00775233; iTF_00777985; iTF_00776002; iTF_00780231; iTF_00774472; iTF_00025227; iTF_00781003; iTF_00673487; iTF_00778735; iTF_00781807; iTF_00777363; iTF_01151189; iTF_00779484; iTF_00782623; iTF_00858529; iTF_01115681; iTF_01176162; iTF_00150532; iTF_01155175; iTF_01331561; iTF_00922858; iTF_01138924; iTF_01157773; iTF_01495759; iTF_01141649; iTF_01156434; iTF_01495028; iTF_00077464; iTF_01130009; iTF_01139582; iTF_00197346; iTF_00290690; iTF_00820069; iTF_00819149; iTF_01429920; iTF_00236611; iTF_00235838; iTF_01490111; iTF_00247171; iTF_01193571; iTF_00723940; iTF_01561988; iTF_00461542; iTF_00723046; iTF_01501096; iTF_00710186; iTF_00795690; iTF_00844331; iTF_01034571; iTF_00159821; iTF_00357485; iTF_00358543; iTF_01181871; iTF_01437967; iTF_01017713; iTF_00960146; iTF_00213427; iTF_00942804; iTF_01018548; iTF_00710997; iTF_01033717; iTF_00970390; iTF_00166904; iTF_00896792; iTF_00958648; iTF_00959384; iTF_01082425; iTF_00971354; iTF_00621212; iTF_00248063; iTF_01438911; iTF_00281315; iTF_00282379; iTF_00404908; iTF_01502074; iTF_00794590; iTF_00827939; iTF_01079875; iTF_00702884; iTF_00705998; iTF_00699153; iTF_00697330; iTF_00701050; iTF_01090756; iTF_00704997; iTF_00709221; iTF_00811013; iTF_01010341; iTF_01099814; iTF_01337734; iTF_00826952; iTF_00428105; iTF_00428993; iTF_00871274; iTF_01402698; iTF_01153963; iTF_00791180; iTF_00364909; iTF_00703949; iTF_00869614; iTF_00636388; iTF_01152142; iTF_00186160; iTF_00185294; iTF_00204336; iTF_00205104; iTF_00450097; iTF_00651729; iTF_00658385; iTF_00878833; iTF_00354066; iTF_00353056; iTF_00407570; iTF_00406735; iTF_01494290; iTF_00823026; iTF_00787635; iTF_01506323; iTF_01078187; iTF_01508046; iTF_01203220; iTF_01206530; iTF_01204871; iTF_01202445; iTF_00430640; iTF_01205681; iTF_01204019; iTF_00341302; iTF_00824726; iTF_00821815; iTF_01170584; iTF_01182872; iTF_01496568; iTF_01503865; iTF_01502960; iTF_00771066; iTF_00114929; iTF_00840282; iTF_01080698; iTF_01342202; iTF_00698299; iTF_00696458; iTF_00657180; iTF_00855868; iTF_01021212; iTF_00642301; iTF_00843517; iTF_00935709; iTF_01158941; iTF_01220637; iTF_00000318; iTF_00001159; iTF_00212446; iTF_00318078; iTF_00457214; iTF_00178143; iTF_00947871; iTF_00842656; iTF_01075425; iTF_00208866; iTF_00049889; iTF_00375201; iTF_00449089; iTF_00036707; iTF_00038757; iTF_00364012; iTF_01526003; iTF_00374103; iTF_00907033; iTF_00906138; iTF_00907866; iTF_00810049; iTF_00809122; iTF_00177107; iTF_00040802; iTF_01094025; iTF_00758154; iTF_00122381; iTF_00745682; iTF_00039796; iTF_00121429; iTF_00667477; iTF_00042617; iTF_00924665; iTF_01093082; iTF_00043485; iTF_00071421; iTF_00124253; iTF_00041759; iTF_00123360; iTF_01487682; iTF_00785187; iTF_00785985; iTF_01029251; iTF_00634468; iTF_01085221; iTF_01063745; iTF_01532001; iTF_00301159; iTF_00711847; iTF_01064648; iTF_01533034; iTF_00302091; iTF_00445163; iTF_00446127; iTF_00685423; iTF_00928687; iTF_01061875; iTF_00447129; iTF_01084249; iTF_01533917; iTF_01533918; iTF_01062784; iTF_01534816; iTF_00850726; iTF_00037799; iTF_00726344; iTF_00172937; iTF_00321577; iTF_00700105; iTF_00017322; iTF_01538730; iTF_00851787; iTF_01527211; iTF_01161357; iTF_00072143; iTF_00661265; iTF_01377457; iTF_00018150; iTF_00273586; iTF_00274412; iTF_01362418; iTF_01361609; iTF_00147443; iTF_00120494; iTF_01285523; iTF_01441076; iTF_01439920; iTF_01363093; iTF_01509589; iTF_00327063; iTF_01246967; iTF_01425047; iTF_00784376; iTF_00783465; iTF_00237561; iTF_00425369; iTF_00171739; iTF_00622816; iTF_00441475; iTF_01360600; iTF_00689380; iTF_00923664; iTF_01542948; iTF_01545733; iTF_01546630; iTF_01543917; iTF_01544864; iTF_01561101; iTF_01016656; iTF_01463237; iTF_00146406; iTF_01358854; iTF_00342183; iTF_00156227; iTF_00155281; iTF_01134773; iTF_00325366; iTF_01135738; iTF_00462373; iTF_00823880; iTF_00195146; iTF_01041738; iTF_01219755; iTF_01230571; iTF_00771910; iTF_00300201; iTF_00951818; iTF_00063574; iTF_01026167; iTF_01030211; iTF_01027311; iTF_01028278; iTF_01031129; iTF_00888251; iTF_00968012; iTF_00162797; iTF_00276398; iTF_00009009; iTF_01464142; iTF_01367889; iTF_00720277; iTF_01119317; iTF_00831211; iTF_01118295; iTF_01117196; iTF_00111648; iTF_01264599; iTF_01076488; iTF_00125112; iTF_00114082; iTF_00075524; iTF_00076516; iTF_01437031; iTF_01172362; iTF_00390353; iTF_00026835; iTF_01280276; iTF_00027735; iTF_00752056; iTF_00113307; iTF_01282269; iTF_00112479; iTF_00347456; iTF_00635393; iTF_00677601; iTF_01491922; iTF_01386689; iTF_01388452; iTF_01385737; iTF_01387581; iTF_00011970; iTF_00157186; iTF_00382594; iTF_00681634; iTF_01334882; iTF_00682412; iTF_00683345; iTF_00034714; iTF_00659427; iTF_00674275; iTF_00206052; iTF_00355140; iTF_00637636; iTF_00148453; iTF_00149379; iTF_00323493; iTF_00660294; iTF_00654269; iTF_01072477; iTF_00656127; iTF_00973766; iTF_01125446; iTF_00055399; iTF_00790247; iTF_01209255; iTF_00044485; iTF_01208174; iTF_00033788; iTF_01281321; iTF_00143051; iTF_00250443; iTF_00284523; iTF_00035641; iTF_01197707; iTF_00180460; iTF_01149569; iTF_01140898; iTF_01144515; iTF_01145251; iTF_01148067; iTF_01146192; iTF_00249682; iTF_01443828; iTF_00420524; iTF_00418968; iTF_00419739; iTF_00421343; iTF_00412493; iTF_01133711; iTF_00411444; iTF_00410267; iTF_00889197; iTF_00957933; iTF_00957932; iTF_01341261; iTF_01451437; iTF_01453252; iTF_00680526; iTF_00013007; iTF_01452304; iTF_01333809; iTF_00275250; iTF_00409266; iTF_01302323; iTF_00640306; iTF_01221556; iTF_01332692; iTF_00666517; iTF_00895925; iTF_01020277; iTF_00279094; iTF_00448118; iTF_00953494; iTF_01338742; iTF_01340095; iTF_00356183; iTF_00432183; iTF_00433131; iTF_00825719; iTF_00913591; iTF_00649080; iTF_00649991; iTF_01166680; iTF_00006265; iTF_01081573; iTF_00806715; iTF_00834619; iTF_00837519; iTF_01071611; iTF_00960913; iTF_01336828; iTF_00289597; iTF_00926589; iTF_01401277; iTF_00007070; iTF_00032894; iTF_00277342; iTF_00621982; iTF_00832990; iTF_00931390; iTF_00932536; iTF_00994334; iTF_01124574; iTF_00074495; iTF_00772863; iTF_00908831; iTF_00112480; iTF_01317275; iTF_00206976; iTF_00836544; iTF_00835577; iTF_01245920; iTF_01416768; iTF_01415825; iTF_00876153; iTF_00715772; iTF_01547535; iTF_00859452; iTF_01564637; iTF_00256899; iTF_00144555; iTF_00255889; iTF_00909694; iTF_00986079; iTF_00985087; iTF_00072800;
90% Identity: iTF_00377091;
80% Identity: -