Basic Information

Insect: Cnaphalocrocis medinalis
Gene Symbol: sox1a
Assembly: GCA_014851415.1
Location: Chr5:13421023-13422129[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.1e-31 5.6e-28 97.0 2.4 1 69 89 157 89 157 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.1e-31	5.6e-28	97.0	2.4	1	69	89	157	89	157	0.99

Sequence Information

Coding Sequence: ATGTTGACGATGGAGACGGATCTCAAAGGCGGCAGCCTGCACGCCACGGTGCCGCCGCACCACGCGCTGCAGCACGGGTACGGCTCGCTGGGCGCGCTCGGCGGCATGATGGCGCTGCCGCAGCAGCAGCCGCTGGCGCAGCACCAGCCGCTGCAGCACCAGCACCACCAGCCGCTGCCGCAGCACCACGCGCAGCCGCAGCAGCACCACCAGCCCCCCAACAACAACAACAACAACACCAGCAAAAACTCCAACACCGACCGCGTCAAGCGCCCGATGAACGCATTCATGGTGTGGTCGCGCGGCCAGCGCAGAAAGATGGCCTCAGATAACCCCAAAATGCACAACTCGGAAATCTCAAAACGCCTCGGCGCCCAGTGGAAAGACCTCTCGGAATCCGAGAAGCGGCCGTTCATCGACGAGGCGAAGAGGCTTCGAGCCGTTCATATGAAGGAACATCCAGACTACAAGTACAGACCGAGGAGGAAGACGAAGACCCTCGCGAAGAAGCAGGAGAAGTACCCGTTGGGCGGCGGCGCGTTGTTAGGCGCGGGAGAGGCGCAAAGAACGGCAGCGCCGTCGGCACAGCAGCCCAGAGACGTATATCAAATGACGCCGAACGGATACATGCCTAACGGATACATGATGCACGATCCGAGCGCGTATCAGCAGCAGGCGTACGGATACCCGCGCTACGACGTGTCTCAGATGCAGCAGGGAGGGTACGGAGGAGGGTACTACGGCGGCGGGCAAGGCTCGCCGTATCTGCCTCAGCCGCCGTCGCCGTCGGCGTACGGGATGGGCCCGGGGTCGCCCGGCGGGTACGCGCTGCCGCCCTCCTGCGCGTCGCACTCGCCGAGCGGGTCGTCGGCCAAGTCGGAGCCCGTGTCGCCCGGGCCGCCGGGCATGAAGCGGGAGTTCGTGGCGCACGAGGGCCCGGCGCAGCTGAAGCGCGAGTTCGCGCCGCACCACGCGCACGCGCACGAGCAGCTGGCGATGAAGCGCGAGTACGGGCAGCAGGACCTGAGCCACATCATCAACATGTACCACGTGCCCGACGAGCAGCGGTACGCCGCCGCCGGCGAGCGCGTCATGCCGCTCATCTGA
Protein Sequence: MLTMETDLKGGSLHATVPPHHALQHGYGSLGALGGMMALPQQQPLAQHQPLQHQHHQPLPQHHAQPQQHHQPPNNNNNNTSKNSNTDRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAKKQEKYPLGGGALLGAGEAQRTAAPSAQQPRDVYQMTPNGYMPNGYMMHDPSAYQQQAYGYPRYDVSQMQQGGYGGGYYGGGQGSPYLPQPPSPSAYGMGPGSPGGYALPPSCASHSPSGSSAKSEPVSPGPPGMKREFVAHEGPAQLKREFAPHHAHAHEQLAMKREYGQQDLSHIINMYHVPDEQRYAAAGERVMPLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00119580;
90% Identity: iTF_01502960; iTF_01443828; iTF_00752056; iTF_00677601; iTF_01115681; iTF_01176162; iTF_01337734; iTF_00195146; iTF_00922858; iTF_01402698; iTF_01157773; iTF_01495759; iTF_00204336; iTF_01156434; iTF_01494290; iTF_01495028; iTF_01496568; iTF_01130009; iTF_00840282; iTF_01139582; iTF_01149569; iTF_01140898; iTF_01144515; iTF_01145251; iTF_01148067; iTF_01138924; iTF_01146192; iTF_00197346; iTF_00957933; iTF_00957932; iTF_00249682; iTF_00180460; iTF_00468157; iTF_00723940; iTF_01386689; iTF_01388452; iTF_01385737; iTF_01387581; iTF_00114082; iTF_00113307; iTF_01317275; iTF_00112479; iTF_00112480; iTF_01282269; iTF_01334882; iTF_00236611; iTF_00235838; iTF_01490111; iTF_00659427; iTF_00660294; iTF_00680526; iTF_01072477; iTF_00656127; iTF_00827939; iTF_00858529; iTF_00290690; iTF_00820069; iTF_00819149; iTF_01090756; iTF_01125446; iTF_00791180; iTF_01083313; iTF_01415825; iTF_00761663; iTF_01416768; iTF_00407570; iTF_00406735; iTF_00895925; iTF_00063574; iTF_00341302; iTF_00033788; iTF_00178143; iTF_00355140; iTF_00356183; iTF_00709221; iTF_01332692; iTF_00821815; iTF_01010341; iTF_00011970; iTF_00428105; iTF_00428993; iTF_00787635; iTF_00146406; iTF_00013007; iTF_01302323; iTF_00640306; iTF_01220637; iTF_00651729; iTF_01331561; iTF_00150532; iTF_00871274; iTF_00658385; iTF_00657180; iTF_00025227; iTF_00250443; iTF_00284523; iTF_00448118; iTF_00035641; iTF_00364909; iTF_01341261; iTF_00869614; iTF_00636388; iTF_00404908; iTF_01166680; iTF_01133711; iTF_00412493; iTF_01333809; iTF_00409266; iTF_01491922; iTF_00382594; iTF_00681634; iTF_00682412; iTF_00683345; iTF_00034714; iTF_00281315; iTF_00282379; iTF_01502074; iTF_00794590; iTF_01429920; iTF_01020277; iTF_00279094; iTF_00432183; iTF_00433131; iTF_00825719; iTF_00077464; iTF_01437967; iTF_00795690; iTF_00970390; iTF_00166904; iTF_01082425; iTF_00971354; iTF_01438911; iTF_01503865; iTF_00736603; iTF_00647975; iTF_00007995; iTF_00806715; iTF_00834619; iTF_00837519; iTF_01071611; iTF_00960913; iTF_00855868; iTF_00859452; iTF_01358854; iTF_01336828; iTF_00926589; iTF_01158941; iTF_01155175; iTF_01153963; iTF_01564637; iTF_01401277; iTF_00032894; iTF_00621982; iTF_00931390; iTF_00932536; iTF_00823026; iTF_00994334; iTF_01124574; iTF_00772863; iTF_00411444; iTF_00410267; iTF_00289597; iTF_00654269; iTF_00148453; iTF_00149379; iTF_01221556; iTF_00072800; iTF_00206976; iTF_00206052; iTF_00666517; iTF_01245920;
80% Identity: -