Aste001374.1
Basic Information
- Insect
- Anopheles stephensi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013141755.1
- Location
- CM023250.1:11497552-11503094[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-106 1.1e-102 343.2 35.8 1 299 174 466 174 467 0.93 2 2 0.097 7.4e+02 -1.0 3.0 210 247 486 522 470 541 0.59
Sequence Information
- Coding Sequence
- ATGGATGGATGCCACCCAGCTGTGTGGACCGGTACGGAGCTACCGTGTACCGACAGTTCCGCTGTAGAGCCGGCACAGAAAAGTAATAGCAGCAGTGTGGGGGACATTTACGTGCTAGCAAACACTGAGCTTTCGCCGGAGTTGGTCGAGGGTGGTGACCGCACGGTGCAGAAGCTGGTTGAGCTGAGCGCACTCGATCTGAACCGGACCCCGATGCCGGTTCCGGCGGATGGGGACGATTTCTACGCCTGCACTACTAACGCGAGTGGTTCGTCTTCACCCGAGCAGCCGCCAAGGGACGCGAGCCGGAACAGTGGTAGCGTCCGGAGCGATAGCTACCATGATTCGTCCTCGGTGCCGGATCCGGACAATGGTCACCAGCAGCCCGGCACCCATACGCTGCACGGTTACGAACCGCACCGGCAGTTTCATCGGCTGTCGGTATCGCACACCGGGGACGAGTTCAGTTCCGAGGAGGATGAAGCGTTTGTGGAACTGCTCGAACGTGCCAGCGACATCGCCGAGGCGCGATTAGCAGCCAGACGACAGGCACGTGCAGAGGCCCGCGAAATACGCATGCGCGAGCTGGAGCGGCAACAGAAGGAGCAGGAACAGTCGGCGGATCGGGTGTTTGatctgcagcagcagtcgaTCGGTCTGTCCGAACCGGCCACCCTGGTCGCTACGCCACGCTCGAGCAGGATGATGGGCCAGAACGCGCTGACACGGGGCAGTGCCCTGTCGTCCCGCCGCAATAGTGAGGATTCGCTCGAGGAGGAAGCCCGCAGCCTGCGCGATCTTCGGCACGAGCTGAAAGACGTTGAGGATCGTTTCCGCAAGGCGATGATTGCGAACGCACAGCTAGACAATGAACGCTCCTCGCTCAACTATCAAATACAGCTGCTGAAGGATAAGCTGGAGGAGGTGGAAGAGTCCCATGCGCAGCTGCAGCGCGAGTATCGGGAGAAGTGTCGCGACCGGGAAGCGCTCAAGCGCAACAACGACAAGCTCAGCGAGGAGCTGAAGCTCGTCCAGGGTCAGCTGCAGGAGCGTGACGCGCTGATAGAGCAGTACGGGCTAGTAATAGTAACGGTAGAGAATGAGGATGGTACGGATGCGCACCGCGCCCTAGTCACAGCGGATAACGCCCAGCTGCTCAAATCCGTTCCCGGCACACTAGACGTAAGACTGAAGAAGTTTGCGGCCGAAAAGCAGGAACTGGAAACCGAACTGCAGgccctccagcagcagctgaacGATATCAAGAGCAAGGGCAGACGGTATACCTCCATGAACGGTTCGCTGGTAGACGACGACTATGAGGATGCGCAGCgCGAAGCGAACAAGCTTATCACGGAGTATAAGTACAAGCTGCAGAAAGCGGAGCAGGAGATTGCCATCCTGCAGGCTAGTCTAGCCCGCTCGGAAACGCAAGTGATCCGATACAAAAGCACTGCCGAGGCGGCAGAAAAGGCGGAAAGCGATCTTAAGATCGAACGAAGAAAGCTACAACGTGAGAACCGTGAAGCCATGGATCGGCTGGAAGAGCTAGAAACATCGAACAACCATCTGCTGAAGCGGCTAGACAAGCTTAAGAACGTCAAGAGTACCATCATGAAGGAAATATGA
- Protein Sequence
- MDGCHPAVWTGTELPCTDSSAVEPAQKSNSSSVGDIYVLANTELSPELVEGGDRTVQKLVELSALDLNRTPMPVPADGDDFYACTTNASGSSSPEQPPRDASRNSGSVRSDSYHDSSSVPDPDNGHQQPGTHTLHGYEPHRQFHRLSVSHTGDEFSSEEDEAFVELLERASDIAEARLAARRQARAEAREIRMRELERQQKEQEQSADRVFDLQQQSIGLSEPATLVATPRSSRMMGQNALTRGSALSSRRNSEDSLEEEARSLRDLRHELKDVEDRFRKAMIANAQLDNERSSLNYQIQLLKDKLEEVEESHAQLQREYREKCRDREALKRNNDKLSEELKLVQGQLQERDALIEQYGLVIVTVENEDGTDAHRALVTADNAQLLKSVPGTLDVRLKKFAAEKQELETELQALQQQLNDIKSKGRRYTSMNGSLVDDDYEDAQREANKLITEYKYKLQKAEQEIAILQASLARSETQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETSNNHLLKRLDKLKNVKSTIMKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00106400;
- 90% Identity
- iTF_00098997;
- 80% Identity
- -