Afon012608.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- grau
- Assembly
- GCA_008817895.1
- Location
- VTWG01006769.1:797-2779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9 1.1e+02 3.3 0.1 3 23 129 152 127 152 0.79 2 12 1.6e-05 0.00092 19.3 0.4 2 23 160 181 159 181 0.96 3 12 3.2 1.8e+02 2.6 0.6 12 23 237 249 235 249 0.83 4 12 0.0025 0.14 12.4 0.6 2 23 257 278 256 278 0.98 5 12 0.068 3.9 7.9 0.1 9 23 366 381 364 381 0.90 6 12 0.0053 0.3 11.3 0.9 2 23 389 410 388 410 0.96 7 12 1.2e-05 0.0007 19.6 0.3 1 23 441 464 441 464 0.96 8 12 0.0035 0.2 11.9 0.5 3 23 471 491 469 491 0.95 9 12 6.2e-07 3.5e-05 23.7 0.4 1 23 497 519 497 519 0.96 10 12 0.00037 0.021 15.0 0.3 2 23 552 574 551 574 0.96 11 12 2.5e-05 0.0014 18.7 2.2 2 20 581 599 581 601 0.94 12 12 5.3e-05 0.003 17.7 2.7 3 23 610 630 608 630 0.97
Sequence Information
- Coding Sequence
- ATGCAGGAGCAGGTACAATATAATGCTGagcaggcggcggcggcggcggcggtggaagGCGTCAATCAGAACGGTCATCATGGAGGCGAACAAAAGTTTGACCCGTCGCCGCTGGTGGACGGGCCCGTGCCGTTGCTGTCCGATGTTCCGGATTATGGCATGAAGCACGAAGTGAACGGAATGCTACCATCCGGCGGATCCGGGGTAACGGCTGTCGGGGGCAACGGTACAGCAGCAGAGTGTCCGTCGGTGTACACGTCGCAGCACAACGATACGGAACCGGAAAGCAGCCGAATCCGGCCGGTCACGGGCAATACACCGAGCAGCCGGAAGCGCCGCAACCAAGAGATGGACGATGAGATTATCGACTTTTACAAGCTGGTCTGTGACGTGTGCGAGGAACGCATCGAGTACGGCACGATGAAGGAGCTGAACCAGCACATGAAGCTGATGCACGGGGAGGAGACGGGCCGGGTCAGTTGTCCGCAGTGTGGCAAGATGTTCCGCACGCGGGGGAAGTTGCTGGAGCACAAGAGCGTGCACCAGCGGCAGGACGCCACGTCCGAGGACGACGCGGAGAAGCTGCAGTCCGAGCAGATGGACAAGGAGATACTGGAGTTTTACAAGCGCATCAGCTGCGATGTGTGCGACACGGCGGCCAGTGCTGCTGCCGGGACCGGTCCACAGGCCAGCGCGATGCTGTACGCGACGGTTAAGGAGCTAAACCACCACATGCGGCTGGTGCACGGGCAGCAGGCCGGTACGGTAAAGTGTCCACTGTGTGAGAAGAAGATCCGTACGCGCCCGAAGCTGCTCGAGCACAAGCGCATGCACCAGCCAAACGCGCTGCTGGAGGAAGATTCCGGCAAGTCGGGCAACCCGGGCGGCGAGCCGGGGCCCGAGCTGACCGAGGAGCAGAAGCAGACGCTAGATAGAGAAATATTCGATTTCTACAAACCCATCATATGTGAGATTTGCGATCCGGAAAAGGTCGCTGTGGCTGTCGCGGTGACCGGCCCCAGCGGTGACCCGGGCGGTGTTGCCGCGGGAGCGGGCCAGCCggaagcggcagcagcagcaacgaccCAGGAGGAGGAGTACCGGTCGCTGAAGCAGCTGAACCAGCACATGCGGACGGTGCACGGGCTCGAGTCGGGCACGGTCAAGTGTCAGCTGTGCGCGAAGAAGTTTCGCTCGCGCGTCAAGCTGGTCGAGCATAAGGATATGCACGAGAATCCGGAGCGGTTCCGGTGCGGCGTGTGCCAGGAGGTGCACCAGAACCTGGAGGAGCACATGCAGAACAAGCACCAGGAGTGGGAGTTTGCTTGCGAGGAGTGCGGCAAGCGGTTTCCTTTCAAGAACAGACTCACTGCCCACATGGCCAAGGTGCACATGAAGAAGGACATTATCTGTGAGGAATGTAACAAACCATTTACAAAGTTCAGCATCGAGAAACACAAGAAAACGGTCCACGGCCACGGTGGGACGTTCATCTGTGAAAACTGCCCGAAAACGTTCAAGACGCGCGTCTCGCTCGAACGACACATGGAGGGGCACAACAacggggagcagcagcagcagccgcaacagcaacaaccgcAACCGCTCCCACTGCCGCTACCGCAGCAACAACCGAGCTCTGCCGCGACCGTCAGCTGCTCCCTGTGCAACTCCGTCCTGAAGGACGAGTACAACCTGAAGGCCCACATGAAGCGCATCCACGCGGAGCAGACGCCGGCGACGTGCAACACGTGCGGCAAGACGTTCAAATCGAAGCACAGTCTCAACACGCACACCGCGAACGTGTGCACGACCCGGCTCTTTGGCTGCACGACCTGCGGCAAGCAGTTTAAGAAGCGGACAAAGTTGAAACAACACATGACGATTCACCCACGCGGCGCCGACTAA
- Protein Sequence
- MQEQVQYNAEQAAAAAAVEGVNQNGHHGGEQKFDPSPLVDGPVPLLSDVPDYGMKHEVNGMLPSGGSGVTAVGGNGTAAECPSVYTSQHNDTEPESSRIRPVTGNTPSSRKRRNQEMDDEIIDFYKLVCDVCEERIEYGTMKELNQHMKLMHGEETGRVSCPQCGKMFRTRGKLLEHKSVHQRQDATSEDDAEKLQSEQMDKEILEFYKRISCDVCDTAASAAAGTGPQASAMLYATVKELNHHMRLVHGQQAGTVKCPLCEKKIRTRPKLLEHKRMHQPNALLEEDSGKSGNPGGEPGPELTEEQKQTLDREIFDFYKPIICEICDPEKVAVAVAVTGPSGDPGGVAAGAGQPEAAAAATTQEEEYRSLKQLNQHMRTVHGLESGTVKCQLCAKKFRSRVKLVEHKDMHENPERFRCGVCQEVHQNLEEHMQNKHQEWEFACEECGKRFPFKNRLTAHMAKVHMKKDIICEECNKPFTKFSIEKHKKTVHGHGGTFICENCPKTFKTRVSLERHMEGHNNGEQQQQPQQQQPQPLPLPLPQQQPSSAATVSCSLCNSVLKDEYNLKAHMKRIHAEQTPATCNTCGKTFKSKHSLNTHTANVCTTRLFGCTTCGKQFKKRTKLKQHMTIHPRGAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104589; iTF_00107183; iTF_00095830;
- 90% Identity
- iTF_00104589;
- 80% Identity
- -