Afar007936.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000473445.2
- Location
- KI915047.1:6751852-6756724[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-108 2.5e-104 348.3 35.8 1 299 130 423 130 424 0.91 2 2 0.043 5.6e+02 -0.9 3.0 210 246 443 478 427 498 0.58
Sequence Information
- Coding Sequence
- ATGACATCACTAGAAACGGAGCGTATGCCATCACCATCACGGCTAGCGGTGGCCGATGATGGTGCCGGCAGCGGTTACTCCAGCCGCGACAGCAGCGTGGGTGACATCTACGAGCTAGCGAGCAGTGACCCGATCGGGGCTTCCTTTCTCACTAACGTCAGTGGTTCGTCTTCGCCCGATCAGCAGCACCCGAGCCGCAACAGTGGCAGCGTTCGGAGTGACAGCTACCACGACTCGTCATCGCTGCAGGAGCACCCGCACCCGACGGCCCAAGGCTACGAACCGCACCGGCAGTACCACCGGCTGTCCGTCTCGCACACCGGCGACGAGTTTAGCTCCGAGGAGGATGAAGCGTTCGTGGAGCTGCTGGAGCGCGCCAGCGATATCGCGGAGGCACGGTTAGCGGCACGACGTCAGGCACGGGCGGAGGCGCGCGAGATACGCATGCGAGAGCTGGAGCGGCAACAGAAAGAGCTGGAGCAGAATGCGGACCGGGTGTTCGATCTGCAGCAGCAGTCGATCGGTCTGTCGGAACCGGCCGGTTTGGCGACGACGCCCCGGTCGAGCCGCATGCTGGCCCAGCAGACGTCGGCGACGCGTGGCAGTGCGCTCTCGTCCCGGCGCAACAGTGAAGACTCGCTCGAGGAGGAGGCCCGAAGTCTGCGCGATCTGCGGCTCGAGCTGAAGGATGTTGAGGAACGATTCCGAAAGGCGATGATCGCGAACGCCCAGCTCGATAACGAGCGCGCTTCGTTCAACTACCACATCCAGCTGCTGAAGGACAAGCTGGAGGAGGTGGAGGAATCGCACGCCCAGCTGCAGCGTGAGTACCGGGAAAAGTGCCGCGACCGGGACGCGCTCAAGCGCAACAACGACAAGCTGACCGAGGAGCTGAAGCTGGTGCAGGGCCAGCTGCAGGAGCGGGACGCACTGATCGAGCAGCACGGGCTGGTCATCGTGACGGTCGAGAACGAGGACGGTACGGATGCGCACCGCGCCCTAGTCACAGCGGACAACGCGCAACTGCTCAAATCCGTGCCCGGTTCGCTAGACGTAAGACTGAAAAAGTTTGCGGCCGAAAAGCAGGAGCTGCAGACGGAACTGCAAACGCTGCAGCAGCAGCTGAACGACGTCAAAAGCAAGGGCAGGCGGTACACGTCCATGAACGGATCGCTCGCGGATGACGATTACGAGGACGCGCAGCGGGAAGCCAACAAGCTGATCACGGAGTATAAGTACAAGCTGCAGAAGGCGGAACAGGAGATCGCGAACCTGCAGGCCAGCCTGGCCCGCTCGGAAACGCAAGTGATCCGGTACAAGAGCACGGCCGAGGCGGCCGAGAAAGCGGAGAGTGATCTGAAGATCGAGCGGCGGAAGCTGCAGCGTGAGAACCGTGAAGCCATGGATCGCTTGGAGGAGCTAGAAACGTCAAATAATCATCTGCTGAAGCGGCTAGACAAGCTCAAAAACGTCAAGAGCACCCTGCTGAAAGATATATGA
- Protein Sequence
- MTSLETERMPSPSRLAVADDGAGSGYSSRDSSVGDIYELASSDPIGASFLTNVSGSSSPDQQHPSRNSGSVRSDSYHDSSSLQEHPHPTAQGYEPHRQYHRLSVSHTGDEFSSEEDEAFVELLERASDIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDLQQQSIGLSEPAGLATTPRSSRMLAQQTSATRGSALSSRRNSEDSLEEEARSLRDLRLELKDVEERFRKAMIANAQLDNERASFNYHIQLLKDKLEEVEESHAQLQREYREKCRDRDALKRNNDKLTEELKLVQGQLQERDALIEQHGLVIVTVENEDGTDAHRALVTADNAQLLKSVPGSLDVRLKKFAAEKQELQTELQTLQQQLNDVKSKGRRYTSMNGSLADDDYEDAQREANKLITEYKYKLQKAEQEIANLQASLARSETQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETSNNHLLKRLDKLKNVKSTLLKDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00106400;
- 90% Identity
- iTF_00098997;
- 80% Identity
- -