Adar003177.1
Basic Information
- Insect
- Anopheles darlingi
- Gene Symbol
- -
- Assembly
- GCA_000211455.3
- Location
- scaffold:59586-63100[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.61 2.1e+03 -1.8 0.1 17 43 235 264 230 273 0.68 2 11 0.24 8.3e+02 -0.5 0.0 24 32 522 530 517 541 0.72 3 11 0.28 9.9e+02 -0.8 0.0 26 45 604 623 598 629 0.85 4 11 0.0043 15 5.1 0.0 21 45 627 651 622 654 0.89 5 11 3.1e-05 0.11 11.9 0.0 21 44 655 678 651 683 0.91 6 11 0.0046 16 4.9 0.1 21 45 683 707 679 712 0.89 7 11 0.098 3.4e+02 0.7 0.0 21 48 735 762 722 767 0.84 8 11 0.00015 0.51 9.8 0.1 21 52 764 795 754 796 0.82 9 11 0.037 1.3e+02 2.1 0.0 22 44 821 843 818 847 0.88 10 11 0.00052 1.8 8.0 0.1 21 48 848 875 843 879 0.86 11 11 0.00023 0.82 9.1 0.0 21 45 876 900 873 906 0.91
Sequence Information
- Coding Sequence
- ATGAGGCTGAATATTGACGACGTGTATGGGCCGCTTAAGAAGAGGGGAAGCGGGGTAAACGTCAACTTGACTTTTGCTACTGCCACCCGTACGAAAAGAAGAAGAAGCAGGAAAATATTTTCTCGGACGGTTTTGGTGCGTGCTGGCGAAAGAATTTTCATCTTTGGTGGTTTTTCGGCGGAACGGAGCAGATTTTCCGTTTACTGTTCCTCGGAGGGCCTCGATCCGCTGTTCGATAGCATCCGAGTCGAGGTGTTCGGGGCGGAAGCTGCCCGCGATGTTGGCATTGTGCAACGTCGAACTGGCGAACGAGGCAGCGTAATACAAGAAGACAAGCGCAAGGTAATGCTCGGCAAGTATGGCGATGCGAGCTCCAGCTCGATGATGAACCTTGAAAGCGGTCTTCGTAACCGAGTACTCTACCATCAGAACATGATGGGCATGAATCTGATGGCCGAATTCTATCAccacaacccaacactagtgaacgcagccacagtcagcagttccgttaccggcagcagcagcagcagcagcaataatagcgcgatcgcgcagtcacaaaaaatgctcaacagcttaagtggaaccatagcaaacgctggtggaaaccatcagcaaccgtcgcagcatACTAACGGCACACCGCTCGCCATTTCGACCGTTTCAACAGCGGCCACCGTCACAAGTACATCGTCGTCATCGTCCTCGTCGTCGCAGCAGCCATTAGCACAGTTTCAGTGTCAAGTTTGTCAGAAAACGTACCTCACCAGCGCGATGCTTGCGGTACACATGAAAACGCACGATAATGCAGCCGGAGGATTCGTGAGCCGACAGGAGGCCACCGTTGGCAGCAGCTATCTTCAGCCGTCTTCTTCATCGCTCGAACACGTATCCGCACCAGCTGTAGCACATGGAGCGAGCAGTAAAACTAGTCCCCCGCTGCTGCTAGCTCAGCACAGCATCAAGAGTGAGTACGCAGGTACCGCACGCGGTATCGGTCAGTTCTCCTCACCGTACGGTATTATCAAGCAGTTTGACTGCCACATCTGCCATAAATCGTTCATGACACTAATGAACCTGAATCTTCACATGAAGATCCATGAAAACGACCAGAAGGTGGTTGCCGCAGCAACTGCCGCCGCAAACGTGTATTCGTCGCACGCTGGAGGCACCGGCACgacctatcaccatcagctgacccatcaacagcagctCCATCCTACGCTGCTGCAGGCGGCATCGTCGTCTGGGGCTGTACCCTCAGCTACTGCAACGACAGGGCGTAACGCCGATGGTGTTTGCCAGATTTGTCACAAAACATTCAACAGCACGGAACAGTTTACGGCCCACATGAAGATCCACGAGGAGGAATTTAAGAATCGTGCCCTCTATCACTCCTCCGCTGCTACCGGCAGCAGTACCGCAGTGGCCACAAGTGCTGCGGCTCAAACGATTAACCCGTTCTATCCTACTCTGCCACAAACACTCGCTCCAGCGGCATCCACACAGCCACAGCAGCAGCAACAACTCCCAGCGGTACATTTGTATGAAAGCTCCAAGGGACACCGATGCCCGATCTGCCACAAAATGTCCAGCAACATTATCGAGCACATAAAACAGCACGAAGGACAGCTAATCATGGGAGGAGGTGGATCATCAGCGACGGCACCCGGTGGTGGTAGTCCATCGGTGGATCGGGCCTGCGCAACGCCAGGTTACCAGCTGAACGAAGAAACATCGCAAGCATCCTCGCTGGCGGAGGTCAGCGATAATGAGGCtggcgatgatgatcagcgcaagcagcacgagtgcttgatctgtcacaaaaagttctcgagctcaagcaatctggccatccacatccgggtgcactccggggagaaaccgttcaagtgtagtgtctgcggcaaaggcttcatccagtcgaacaatctggccacacacatgaaaacgcataccggcgaaaagccttacacgtgtacgatctgtggcaagaagtttagccagtcgaacaacctgaagacacacatccggacacacacgggcgagcggccttacgcgtgtacgatttgtggtaagcggttcaaccagaagaacaacctgacgacgcacatgcgcactcaccagctggtgtgcatggtgtgcggggtccagtttgcgcatccgaccgatctggcgaaccacatgaagttccacaacgacgagaaaccgtacatttgttcggtctgcaacaaggtgtacctcaatctggacgagctgactgaacatatgaagaagacgcacaaccaggtcaaaccgtaccgatgccacatctgcgacaagacgtttacgcagtccaacaacctgaagacgcacatcaagacgcacatcttccaggatccgtacaagtgtcagatgtgttcccgttcgttccagcgagaggatgagtacggacagcacatgcttgtccacacggcggacaaaccgtacgagtgtacgtactgtggcaagcgtttcattcagtcgaacaatctgaaaacgcacgtccgaacgcacacgggcgagaaaccgtacagctgttcgatctgtctgcggaactttaaccagaagaacaacctgaacacgcacatgcgcatccacaccggtgagaaaccgttcgagtgtacaatctgcgacaagcgtttcaatcagtcgaacaacctgaacaaacacatcaagacgcacggtcaggagaaggaccagcagcaacagcagcagcaatcgcagcaccaacaccaccatcaccaccatcagcaacaccagcagcagcagcttccaagttga
- Protein Sequence
- MRLNIDDVYGPLKKRGSGVNVNLTFATATRTKRRRSRKIFSRTVLVRAGERIFIFGGFSAERSRFSVYCSSEGLDPLFDSIRVEVFGAEAARDVGIVQRRTGERGSVIQEDKRKVMLGKYGDASSSSMMNLESGLRNRVLYHQNMMGMNLMAEFYHHNPTLVNAATVSSSVTGSSSSSSNNSAIAQSQKMLNSLSGTIANAGGNHQQPSQHTNGTPLAISTVSTAATVTSTSSSSSSSSQQPLAQFQCQVCQKTYLTSAMLAVHMKTHDNAAGGFVSRQEATVGSSYLQPSSSSLEHVSAPAVAHGASSKTSPPLLLAQHSIKSEYAGTARGIGQFSSPYGIIKQFDCHICHKSFMTLMNLNLHMKIHENDQKVVAAATAAANVYSSHAGGTGTTYHHQLTHQQQLHPTLLQAASSSGAVPSATATTGRNADGVCQICHKTFNSTEQFTAHMKIHEEEFKNRALYHSSAATGSSTAVATSAAAQTINPFYPTLPQTLAPAASTQPQQQQQLPAVHLYESSKGHRCPICHKMSSNIIEHIKQHEGQLIMGGGGSSATAPGGGSPSVDRACATPGYQLNEETSQASSLAEVSDNEAGDDDQRKQHECLICHKKFSSSSNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYTCTICGKKFSQSNNLKTHIRTHTGERPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFAHPTDLANHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQREDEYGQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYSCSICLRNFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKDQQQQQQQSQHQHHHHHHQQHQQQQLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098510;
- 90% Identity
- iTF_00093149;
- 80% Identity
- iTF_00098510;