Basic Information

Insect: Anopheles aquasalis
Gene Symbol: -
Assembly: GCA_002846955.1
Location: NJHH01001727.1:69638-73255[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.5 2.1e+03 -1.6 0.2 13 32 105 127 98 142 0.66

2 12 2.7 1.1e+04 -3.9 0.1 27 45 211 229 210 231 0.80

3 12 0.2 8.3e+02 -0.3 0.0 24 32 381 389 376 400 0.72

4 12 0.14 5.7e+02 0.2 0.0 26 47 463 484 456 489 0.81

5 12 0.0034 14 5.4 0.0 21 45 486 510 480 513 0.89

6 12 2.8e-05 0.12 12.0 0.0 21 44 514 537 511 541 0.91

7 12 0.0039 16 5.2 0.1 21 45 542 566 538 571 0.89

8 12 0.11 4.4e+02 0.6 0.0 21 47 594 620 581 623 0.83

9 12 0.00012 0.51 10.0 0.1 21 52 623 654 613 655 0.82

10 12 0.02 84 2.9 0.0 22 45 680 703 677 710 0.84

11 12 0.00044 1.8 8.2 0.1 21 48 707 734 702 738 0.86

12 12 0.0002 0.81 9.4 0.0 21 45 735 759 732 765 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.5	2.1e+03	-1.6	0.2	13	32	105	127	98	142	0.66
2	12	2.7	1.1e+04	-3.9	0.1	27	45	211	229	210	231	0.80
3	12	0.2	8.3e+02	-0.3	0.0	24	32	381	389	376	400	0.72
4	12	0.14	5.7e+02	0.2	0.0	26	47	463	484	456	489	0.81
5	12	0.0034	14	5.4	0.0	21	45	486	510	480	513	0.89
6	12	2.8e-05	0.12	12.0	0.0	21	44	514	537	511	541	0.91
7	12	0.0039	16	5.2	0.1	21	45	542	566	538	571	0.89
8	12	0.11	4.4e+02	0.6	0.0	21	47	594	620	581	623	0.83
9	12	0.00012	0.51	10.0	0.1	21	52	623	654	613	655	0.82
10	12	0.02	84	2.9	0.0	22	45	680	703	677	710	0.84
11	12	0.00044	1.8	8.2	0.1	21	48	707	734	702	738	0.86
12	12	0.0002	0.81	9.4	0.0	21	45	735	759	732	765	0.91

Sequence Information

Coding Sequence: ATGCTCGGCAAGTATGGCGATGCGAGCTCCAGCTCGATGATGAACCTTGAAAGCGGACTTCGCAACCGGGTACTGTACCACCAGAACATGATGGGTATGAATCTGATGGCCGAATTCTACCACCACAACCCGACACTAGTGAACGCAGCCACAGTCAGCAGTTCCgttaccggcagcagcaatagcgCCATCGCGCAGTCACAGAAGATGCTCAACAGCTTGAGCGGAAACCATCAGCAATCGACGCAGCATAGCAACGGCACGCAGCTCGCCATTTCCACCGTTGCGACAGCGGCAACCGCCACGAgtacatcgtcgtcgtcgtcctcctcatcgtcacaGCAACCATTGGCACAGTTTCAGTGTCAACTTTGCCAGAAAACGTACCTCACCAGCGCGATGCTTGCGGTGCACATGAAAACGCACGAtactgtggccaccggtgccagcagcTATCTGCAACCGTCTGGTTCTGACCACGTACCcgctccggcagcagcacatggAGCGAACAGTAAAACTAGTCCCCCGCTGCTGTTAGCTCAGCACAGCATCAAGAGTGAGTACGCTGGTACTGTGCGCAGTATCGGTCAGTTCTCCTCACCGTACGGTATTATCAAGCAGTTTGACTGCCACATCTGCCATAAATCGTTCATGACGCTGATGAACCTGAACCTCCACATGAAGATCCACGAAAACGACCAGAAGGTGGTCGGCACCTCCGCACACGTGTATTCGTCGCACGCAGGAGGCACCGGCACGACctatcaccatcagcagaaccatcaacagcagctccatcCGACGCTGCTGCAGGCGGCATCGTCGTCTGGGGCTGTTCCCTCGGCTACTGCGTCAACAGGGCGTAGCGCCGATGGTGTTTGCCAGATTTgtcataaaacattcaacagcACAGAACAGTTTACGGCCCACATGAAGATCCATGAGGAAGAATTTAAAAATCGTGCCCTCTATCACTCGTCCACTGCTACCGGGAGCAGCACAACAGTGGCCACAAGTACTGCGGCGCAAACGATAAACCCGTTCTATCCTACTCTGCCGCAAACACTCACGCCAGCGACATCAGCcacacagccgcagcagcagcttccagcgGTACATTTGTACGAAAGCTCCAAGGGGCATCGTTGTCCAATCTGCCACAAAATGTCCAGCAACATTATTGAGCATATTAAGCAGCACGAAGGGCAGCTAATAATGGGAGGAGGTGGATCGTCGGCAACGGCCCCCGGTGCTGGTAGTCCATCGGTAGACCGATCCTGCGCAACGCCCGGTTACCAACTGAACGAAGAAACATCGCAAGCATCCTCACTGGTGGAGGGCAGTGATAATGAggccggcgatgatgatcagcgCAAGCAGCACGAGTGCTTGATCTGTCACAAAAAGTTCTCCAGCTCGAGCAATCTGGCCATCCACATCCGGGTGCATTCGGGGGAGAAACCGTTCAAATGTAGTGTCTGCGGCAAAGGCTTCATCCAGTCGAATAATCTGGCCACACACATGAAAACGCACACCGGCGAAAAGCCTTATACGTGCACGATCTGCGGCAAAAAGTTTAGCCAATCGAACAATCTGAAGACCCACATCCGGACGCATACGGGTGAGCGGCCGTACGCTTGTACGATCTGTGGGAAGCGGTTCAACCAGAAGAATAATCTGACGACGCACATGCGTACGCATCAGCTGGTGTGTATGGTGTGTGGGGTACAGTTTGCGCATCCGACCGATCTGGCGAACCACATGAAGTTCCACAACGACGAGAAACCGTACATTTGTTCAGTCTGCAACAAGGTGTACCTCAATCTGGACGAGCTGACCGAACACATGAAGAAGACGCACAACCAGGTCAAACCATACCGGTGCCACATCTGCGACAAGACTTTCACGCAGTCCAACAATCTGAAGACGCACATCAAAACGCACATCTTCCAGGATCCGTACAAGTGTCAGATGTGTTCGCGTTCGTTCCAACGGGAGGACGAGTACGGTCAGCACATGCTCGTCCATACGGCGGACAAACCATACGAGTGTACGTACTGTGGTAAGCGCTTCATCCAGTCGAACAATTTGAAAACCCACGTACGGACGCATACGGGTGAGAAACCGTACAGCTGCTCGATCTGTCTGCGGAACTTTAACCAGAAAAACAACTTGAACACGCACATGCGCATCCACACGGGAGAGAAACCGTTCGAATGTACGATCTGCGACAAGCGGTTCAATCAGTCGAACAATCTGAACAAACACATCAAGACGCACGGCCAGGAGAaggaccagcaacagcagcagacgctgcaacaacaccaacagcaacagctccagcaccatcagcaacaccagcagcagcagcaacagcttccaAGTTGA
Protein Sequence: MLGKYGDASSSSMMNLESGLRNRVLYHQNMMGMNLMAEFYHHNPTLVNAATVSSSVTGSSNSAIAQSQKMLNSLSGNHQQSTQHSNGTQLAISTVATAATATSTSSSSSSSSSQQPLAQFQCQLCQKTYLTSAMLAVHMKTHDTVATGASSYLQPSGSDHVPAPAAAHGANSKTSPPLLLAQHSIKSEYAGTVRSIGQFSSPYGIIKQFDCHICHKSFMTLMNLNLHMKIHENDQKVVGTSAHVYSSHAGGTGTTYHHQQNHQQQLHPTLLQAASSSGAVPSATASTGRSADGVCQICHKTFNSTEQFTAHMKIHEEEFKNRALYHSSTATGSSTTVATSTAAQTINPFYPTLPQTLTPATSATQPQQQLPAVHLYESSKGHRCPICHKMSSNIIEHIKQHEGQLIMGGGGSSATAPGAGSPSVDRSCATPGYQLNEETSQASSLVEGSDNEAGDDDQRKQHECLICHKKFSSSSNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYTCTICGKKFSQSNNLKTHIRTHTGERPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFAHPTDLANHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQREDEYGQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYSCSICLRNFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKDQQQQQTLQQHQQQQLQHHQQHQQQQQQLPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00098510;
90% Identity: iTF_00092939; iTF_00098510; iTF_00098693;
80% Identity: iTF_00092939;