Basic Information

Insect: Anopheles culicifacies
Gene Symbol: -
Assembly: GCA_000473375.1
Location: AXCM01002238:25462-27699[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.4 1.4e+03 -0.9 0.5 19 43 104 130 90 134 0.50

2 13 2 7.1e+03 -3.1 0.0 27 45 206 224 204 227 0.83

3 13 0.54 1.9e+03 -1.3 0.0 15 35 273 293 267 305 0.73

4 13 0.38 1.3e+03 -0.8 0.0 26 32 366 372 361 383 0.74

5 13 0.71 2.5e+03 -1.7 0.0 27 45 437 455 433 458 0.86

6 13 0.0041 15 5.5 0.0 21 45 459 483 453 487 0.89

7 13 0.00021 0.74 9.7 0.0 21 44 487 510 482 514 0.91

8 13 0.0038 14 5.6 0.1 21 45 515 539 511 544 0.89

9 13 0.13 4.8e+02 0.7 0.0 21 47 567 593 554 596 0.83

10 13 0.00015 0.54 10.1 0.1 21 52 596 627 586 628 0.82

11 13 0.025 89 3.0 0.0 22 45 653 676 650 683 0.84

12 13 0.0016 5.9 6.8 0.1 21 48 680 707 675 711 0.86

13 13 0.00023 0.82 9.5 0.0 21 45 708 732 704 738 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.4	1.4e+03	-0.9	0.5	19	43	104	130	90	134	0.50
2	13	2	7.1e+03	-3.1	0.0	27	45	206	224	204	227	0.83
3	13	0.54	1.9e+03	-1.3	0.0	15	35	273	293	267	305	0.73
4	13	0.38	1.3e+03	-0.8	0.0	26	32	366	372	361	383	0.74
5	13	0.71	2.5e+03	-1.7	0.0	27	45	437	455	433	458	0.86
6	13	0.0041	15	5.5	0.0	21	45	459	483	453	487	0.89
7	13	0.00021	0.74	9.7	0.0	21	44	487	510	482	514	0.91
8	13	0.0038	14	5.6	0.1	21	45	515	539	511	544	0.89
9	13	0.13	4.8e+02	0.7	0.0	21	47	567	593	554	596	0.83
10	13	0.00015	0.54	10.1	0.1	21	52	596	627	586	628	0.82
11	13	0.025	89	3.0	0.0	22	45	653	676	650	683	0.84
12	13	0.0016	5.9	6.8	0.1	21	48	680	707	675	711	0.86
13	13	0.00023	0.82	9.5	0.0	21	45	708	732	704	738	0.91

Sequence Information

Coding Sequence: ATGCTCGGCAAGTATGGCGAAGCGAGTTCCGGCTCGATGAAAAACCTGGATAATGGACTGAGGGACCGGGTGCTGTACCATCAGAATATGCTCAGCATGAACCTGACGGCCGAATTTTACCACAATCCATTCCTTACCACCAGTTCCGGTGGTGGTAGTAACGTCGTTGGAACATCTGTGAGCGGCACCTCCACGATGGCACAGTCGCAAAAGATGCTCAACAGTCCTGCGTCCGCTAGCCATCTACAGCAACACCCCAGTAATGGATCAGCAACGGCACCAGGTACACCGACAGTCCCAAACAGTGCATCCACACAGCAACCGCTGACGCAGTACCAGTGTCAACTCTGTCAGAAGTGTTTCATCTCGAGCGCGGTACTAACACAACACATGAAAACACATGATAATAATGGATTCGTCGCCCGTGAAGCAGGCAATTATGGACAACAGCAACAATCGGTTACATCGGCACCCGCACCAGTAACGGCTGTCGCATCAAGCAGTAAAACTAGTCCGCCACTGTTAACGCAACACAACATCAAGAGCGAGTATGTGGGTGGAACCGTAACGAACACGATGGGTCAGTTTGTGTACGGTATGGCGAAGCAGTTCGAATGCCAGATCTGCCACAAGTCGTTCATGACGATGGTGAACCTAAATCTGCACATGAAAATACACGAAGCCGGTATAAAACCGATTGCATCCGCTCACACGTACGCACAAGCCAGTGGCGGGAATTTACTAGTCGGTTTGACGGCCGGCACGGCAAACTATCACAGTGGACAACATCACAACCAGCAGCACCATACGATAGGCCCGGCTGTACCCAGCTCCAGTAATACCGACGGAGTGTGTCAAATATGCCACAAAACGTTTAGCACAGCGGACCAGTTTACGGCGCATATGAAAATCCATGAAAACGAATTTAAAAATCGTGCACTTTATCAGTCGAGCAGCTCGAACGGTGATGGGTCTACCGGTGGTCCCGTATCGACAAGCAATGGTGGCGGTGTGGGGGATCATTTCTACGCTTCAGCGCCGCCAACACATCAGTTAGCGCATGGTCCTCCTCACCTCGATGCCAGCAAGGGCCATCGATGTCCCATTTGCCATAAAATGTCCAACAATATCATTGAACATATAAAGCAGCACGAAGGGCAGCTTACGATGGGTGGTAGCACTGGAACGACAGGTGTCGTAGGATCTCCAGGGCCGGGAGCAGTTCCAGGTTATCAACAAACGAACGAAGATTCACAATCATCGCTGGAAGAAGATAGTGATGGTGGTGAGAACGTCCGGAAgcatgaatgcttgatctgtcataagaagttttccagctcgggcaatctggccattcacatacgggtacattcgggcgaaaaaccgttcaagtgcagcgtgtgcggcaagggcttcatccaatcgaacaatctggcgacgcacatgaagacacacacgggcgaaaaaccttacgcatgtaccatctgcgggaaaaactttagtcagtcaaacaacctgaaaacacacatccggacgcacacgggcgaaaagccgtacgcgtgcaccatctgtggcaaacggtttaatcagaaaaacaacctgaccacccacatgcgcacgcatcagctggtgtgcatggtgtgtggtgtgcagtttatgcatccgtccgatctggcaaaccacatgaagttccacaatgatgaaaaaccgttcatctgctcggtatgcaataaggtgtacctcaacctggacgagctgaccgagcacatgaagaaaacgcacaaccaggtgaaaccgtaccggtgtcacatctgcgataagacgtttacacagtcgaacaatctgaaaacccacattaagacgcacatctttcaggatccgtacaagtgccagatgtgttcccgatcgttccaaaaggaggatgattactcgcagcatatgttggtacatacggcagataaaccgtacgagtgtacatactgtggtaagcggttcatacagtcgaacaacttgaaaacgcacgttagaacgcatacgggtgaaaagccttacaagtgtgtgatctgtgcgaagaacttcaaccagaagaacaatctcaacacgcacatgcgcatccacacgggggagaaaccgttcgagtgtacgatctgtgacaaacggtttaATCAGTCCAACAACCTCAACAAGCACATCAAAACGCATGGCCAGGAAAAGGACCAGAAGCAGCAGGCAAGTTGA
Protein Sequence: MLGKYGEASSGSMKNLDNGLRDRVLYHQNMLSMNLTAEFYHNPFLTTSSGGGSNVVGTSVSGTSTMAQSQKMLNSPASASHLQQHPSNGSATAPGTPTVPNSASTQQPLTQYQCQLCQKCFISSAVLTQHMKTHDNNGFVAREAGNYGQQQQSVTSAPAPVTAVASSSKTSPPLLTQHNIKSEYVGGTVTNTMGQFVYGMAKQFECQICHKSFMTMVNLNLHMKIHEAGIKPIASAHTYAQASGGNLLVGLTAGTANYHSGQHHNQQHHTIGPAVPSSSNTDGVCQICHKTFSTADQFTAHMKIHENEFKNRALYQSSSSNGDGSTGGPVSTSNGGGVGDHFYASAPPTHQLAHGPPHLDASKGHRCPICHKMSNNIIEHIKQHEGQLTMGGSTGTTGVVGSPGPGAVPGYQQTNEDSQSSLEEDSDGGENVRKHECLICHKKFSSSGNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPSDLANHMKFHNDEKPFICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQKEDDYSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYKCVICAKNFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKDQKQQAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00102066;
90% Identity: iTF_00097912; iTF_00105516; iTF_00105275; iTF_00105279; iTF_00102066; iTF_00101809;
80% Identity: iTF_00097912;