Aatr002173.1
Basic Information
- Insect
- Anopheles atroparvus
- Gene Symbol
- -
- Assembly
- GCA_015501955.1
- Location
- CALTRM010000018.1:1186947-1189271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8e-05 0.0014 17.6 1.8 3 23 241 261 239 261 0.97 2 15 9.9e-05 0.0078 15.3 4.0 1 23 269 291 269 291 0.96 3 15 3.6e-06 0.00028 19.9 0.2 1 23 300 322 300 322 0.98 4 15 6.4e-07 5e-05 22.2 5.2 1 23 328 350 328 350 0.98 5 15 0.0018 0.14 11.4 0.2 2 23 358 379 357 379 0.97 6 15 2.9e-05 0.0023 17.0 3.4 1 23 385 408 385 408 0.94 7 15 0.002 0.16 11.2 5.7 1 21 414 434 414 435 0.94 8 15 0.073 5.7 6.3 2.4 3 23 443 464 441 464 0.93 9 15 1.9e-05 0.0015 17.6 0.7 1 23 499 521 499 521 0.97 10 15 0.00015 0.012 14.7 0.1 1 23 532 554 532 554 0.94 11 15 3.1e-06 0.00024 20.1 1.9 1 23 584 606 584 606 0.99 12 15 0.22 17 4.8 3.4 3 23 642 662 641 662 0.95 13 15 0.0034 0.27 10.5 5.0 1 23 668 690 668 690 0.98 14 15 7.5e-08 5.9e-06 25.1 1.5 1 23 698 720 698 720 0.99 15 15 0.00024 0.019 14.1 0.8 1 23 726 749 726 749 0.96
Sequence Information
- Coding Sequence
- ATGGATTACAATGCGTACAACAGCAAGCTTTACCCCGGGGTTTCCCAGCCCGTGCCTGGCAGCTCCGGGCTCTTTCAAACAAGTGCCGCAACGGCGACGTTCCTTAAAGTTCCCAACCCTCCGATGATCAAGCAGGAATCTTCCGCGTCGATTCCGTCTGCGGGAAACCTCGGTGAAGCATCTACGCCGCCCGTTAACTACAGCCAGAATCAACATTTTGTGAACCATAGCGATGTGGTGGAGCCGGAAAAACCATTGTACTACAGGAAACCGTTTGACCTGCAGTTCATGTCcaacacgtacatgcagcaccattcacagcagttcatgcagcatccacagcatcatgcccaccaccatcatcatcatcatcatccccctccacatcatcatcacatgcagcaacagcagcatcagcagcatccttcgtcagtgccatctcacgtgcaatcagagcaacaggtgcagcttgttacgcagcagcaccagcaccattcgcatgtctcgagcttTCACGACTATCCGGACCACTCCAACGCATCCAGCGTTGGATCGTCCTGCGTCGAGCCTCAAGCGTACGTAGTGCACCGGCCATCCGGCCCTGTGCAGCTAGTGAAAGCGGCGCCAATGCCTCCTGCGCTGGCGATTCCAGCCGGCGATGCCGTCACAGAAAGCCCACCCGTTCAGGCCCCATTGCCTACTAAAGCGCCACGGTTCGGCtgcgactcctgcacgaagacgttcgacacgaaatcgaagctggagaaacacgccaagacgcatctgccgcacgaggagcaggtcttcaagtgtcgcatgtgcgataaagtcttccgcacgaaaagcaccctcatctgccacgagaaggtgcacggcgagaacggtgtcgacaatagcttttcctgcgtggagtgcggcaaggtgttcgcttccgacgacaagctgcaggtgcaccggcggctgcacaccggcgaaaagccgtaccagtgtaaggtgtgccagaagtgcttcaaccatcagtcgaacctgatcgtccactcgcgcatccacgagaaggtgaagaaggcgctgaagtgcgatcgctgcagcaaggtgctggacaacgaggagcgcctggccatccacatgcggctgcacacgggcgaaaagccgtacaagtgctcgtactgcgacaagcgcttcaatcacaagagcacggtcagtacgcacgagaaggcggcccacatagcggccaactcgttcaagtgcgcccgctgccacaagacattcaatcaaaagtgccaactgcagtaccacgagaagctgcaggaagaacacacgatcgcgtgtgccttgtgcgaaaaggtgttctgctacaaggcgagccacaaggagcacatgTTTAAGGTGCACCTGCCCCGCCAGAAGAAGGAACAGAAAAAGGACCCGTCGGGATCGGGGCAGGACGGACGCGGTGCAGCTGCCAGTGGTGTCGGCGCGCAGGGTCGGAATAAGTTCAAATGCACCGTGTGCGATCGCCGGTTTTACTACAAACGAGCGCTGGACGTGCATATGGGCGTGCATGACGCTTCGCTGGACGTGAACGTTCTACACTTCTCGTGCAACTACTGCCCGGAGACGTTCACCGAGGAGGAACCGCTGCAACGGCACGAGGCAGAGCACGAGGCGAACGGGACGACGGATTTCCTCGAGAACATGAAAGCGCTCGAGCAGTCGGAAAATCCCGCCAACGGTCAGGTGGACGGGGGCTTCCGGTGTCCGCTGTGCTTCAAGCGGTTCGAGGATCGGCCCGCACTGCGTGCGCATCACCGGACGCATCTGTGCGCACAAACTGGCTGCACCAAGTGTGAGCGGGCCCGTGCGGACGATTTTGACCCGAGCACCCCCACGTACGACCCCGAGGAGGATCGGCGGGAAACGCTGTGCAACATTTGCCACCGTGCGCTGCCCTCGTTCGAGCAGTTTCAGAACCACTTCCACTACCACACGTCCCGTGTGCCGTTCTACTGCTTCCACTGCCGGGTGGAGTTTAGCGATAAGCGCGAACTGTACACACACTCCAAGACCCATTCGCCGCGCGAGCTGGAGTCGTACACGTGCGAGATCTGTGCGAAGGTGTTCTCGACGAAGGGCAACTTCAAGCGGCACCTGAAATCTCACGAGACGGTCCGGGCGTTCGCGTGCGACCGGTGCTTCAAGCAGTACGACTACAAGAGCGCCCTCGAGGCGCACCTGAAGCGCTCCCACGGTATCGAGTTGTAG
- Protein Sequence
- MDYNAYNSKLYPGVSQPVPGSSGLFQTSAATATFLKVPNPPMIKQESSASIPSAGNLGEASTPPVNYSQNQHFVNHSDVVEPEKPLYYRKPFDLQFMSNTYMQHHSQQFMQHPQHHAHHHHHHHHPPPHHHHMQQQQHQQHPSSVPSHVQSEQQVQLVTQQHQHHSHVSSFHDYPDHSNASSVGSSCVEPQAYVVHRPSGPVQLVKAAPMPPALAIPAGDAVTESPPVQAPLPTKAPRFGCDSCTKTFDTKSKLEKHAKTHLPHEEQVFKCRMCDKVFRTKSTLICHEKVHGENGVDNSFSCVECGKVFASDDKLQVHRRLHTGEKPYQCKVCQKCFNHQSNLIVHSRIHEKVKKALKCDRCSKVLDNEERLAIHMRLHTGEKPYKCSYCDKRFNHKSTVSTHEKAAHIAANSFKCARCHKTFNQKCQLQYHEKLQEEHTIACALCEKVFCYKASHKEHMFKVHLPRQKKEQKKDPSGSGQDGRGAAASGVGAQGRNKFKCTVCDRRFYYKRALDVHMGVHDASLDVNVLHFSCNYCPETFTEEEPLQRHEAEHEANGTTDFLENMKALEQSENPANGQVDGGFRCPLCFKRFEDRPALRAHHRTHLCAQTGCTKCERARADDFDPSTPTYDPEEDRRETLCNICHRALPSFEQFQNHFHYHTSRVPFYCFHCRVEFSDKRELYTHSKTHSPRELESYTCEICAKVFSTKGNFKRHLKSHETVRAFACDRCFKQYDYKSALEAHLKRSHGIEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00105961; iTF_00109290; iTF_00107821; iTF_00096526;
- 90% Identity
- -
- 80% Identity
- -