Basic Information

Insect: Anopheles plumbeus
Gene Symbol: -
Assembly: GCA_034621735.1
Location: JAOEFI010000004.1:11950312-11952574[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0024 18.3 2.5 1 23 225 247 225 247 0.97

2 15 0.00067 0.059 13.9 4.0 1 23 255 277 255 277 0.96

3 15 8.4e-06 0.00074 19.9 0.2 1 23 286 308 286 308 0.98

4 15 8.6e-06 0.00076 19.9 4.7 1 23 314 336 314 336 0.98

5 15 0.0042 0.37 11.4 0.2 2 23 344 365 343 365 0.97

6 15 6.9e-05 0.0061 17.0 3.4 1 23 371 394 371 394 0.94

7 15 0.0048 0.42 11.2 5.7 1 21 400 420 400 421 0.94

8 15 0.05 4.5 8.0 2.4 3 23 429 450 427 450 0.93

9 15 7.8e-06 0.00069 20.0 0.7 1 23 473 495 473 495 0.97

10 15 0.003 0.27 11.9 0.2 1 23 506 528 506 528 0.94

11 15 4.8e-05 0.0043 17.5 2.9 1 23 558 580 558 580 0.98

12 15 0.13 12 6.7 4.0 2 23 615 636 614 636 0.94

13 15 0.007 0.62 10.7 4.8 1 23 642 664 642 664 0.98

14 15 1.8e-07 1.6e-05 25.2 1.5 1 23 672 694 672 694 0.99

15 15 0.0011 0.099 13.2 1.3 1 23 700 723 700 723 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0024	18.3	2.5	1	23	225	247	225	247	0.97
2	15	0.00067	0.059	13.9	4.0	1	23	255	277	255	277	0.96
3	15	8.4e-06	0.00074	19.9	0.2	1	23	286	308	286	308	0.98
4	15	8.6e-06	0.00076	19.9	4.7	1	23	314	336	314	336	0.98
5	15	0.0042	0.37	11.4	0.2	2	23	344	365	343	365	0.97
6	15	6.9e-05	0.0061	17.0	3.4	1	23	371	394	371	394	0.94
7	15	0.0048	0.42	11.2	5.7	1	21	400	420	400	421	0.94
8	15	0.05	4.5	8.0	2.4	3	23	429	450	427	450	0.93
9	15	7.8e-06	0.00069	20.0	0.7	1	23	473	495	473	495	0.97
10	15	0.003	0.27	11.9	0.2	1	23	506	528	506	528	0.94
11	15	4.8e-05	0.0043	17.5	2.9	1	23	558	580	558	580	0.98
12	15	0.13	12	6.7	4.0	2	23	615	636	614	636	0.94
13	15	0.007	0.62	10.7	4.8	1	23	642	664	642	664	0.98
14	15	1.8e-07	1.6e-05	25.2	1.5	1	23	672	694	672	694	0.99
15	15	0.0011	0.099	13.2	1.3	1	23	700	723	700	723	0.96

Sequence Information

Coding Sequence: ATGGAGTACAATGcctacaacaacaaactgtACCCCGGGGTTTCCCAACCCGCCCCTGGCAGTTCCGGTTTCTTCCAAACAAGTGCCGCCACAGGGACGTTCCTGAAAGTGCCCAACCTTCCGCTGATCAAGCAGGAATCGTCCACATCGATTCCCACCGGAAACCTCGGCGGAACGGCTACACCGCCAGTCAACTACAGCCAGAATCAACACTATGCAAACCACAACGATCCGCCGGACCCGGAGAAGCCTTTGTTCTACAGGAAGCCATTTGAATTGCAGTTCATGTCCCACGCCTACATGCAAccccatcagcagcagttcattcagcaccaacagcatgtccctcatcatcatcaccaccatttgcagcaccagcaccagcagtcaGTGCCATCTCACGTACAATCACAGCAACAGGTGCAGCATGTAAatctgcagcaccagcaacatcaacatgcTGCGTGCTTCCACGATTTTACGGATCATTCCAACGCGTCCAGCATAGGGTCGTCCTCCGTGGAGCCGCATGCATACGTAGTGCATCGGGCGCCCGTTCCAGAGCAGTTGTCGAAGGTGGCTCCTATGCCTTTTGCGATGTCGATTTCTGCAAGTGCTGCTTCGGCATCGATAATCGACGAGCCAGCTACGGTGACCGCCCAACCGACGCGTTTCGCCTGCGACTCGTGCACGAAGACGTTCGACACAAAGTCGAAGCTGGAGAAGCACAGCAAGACGCATCTCTCGTGCGACGACCAGGTCTTCAAGTGTCGCATGTGTGATAAAATCTTTCGCACGAAAAGCACTCTCATCTGCCACGAGAAAGTGCACGGCGAGAGTGGCGTCGACAACAGCTTCTCCTGCGTGGAGTGCGGCAAGGTGTTCGCCAGCGACGACAAGCTGCAGGTGCATCGGCGGTTGCATACGGGCGAAAAGCCGTACCAGTGCAAGGTGTGCCTGAAGTGCTTCAACCACCAGTCCAACCTCATCGTGCATTCGCGTATCCACGAGAAGGTGAAGAAGGCGCTGAAGTGCGATCGCTGCAGCAAGGTGCTGGACAACGAGGAACGGCTCGCCATCCACATGCGGCTGCACACGGGCGAAAAGCCGTACAAGTGCTCGTACTGTGACAAGCGGTTCAATCACAAGAGCACGGTTAGCACGCACGAGAAGGCGGCCCATATAGCGGCCAACTCGTTCAAGTGTGCCCGCTGCCATAAAACGTTCAATCAGAAGTGCCAGCTGCAGTACCATGAGAAGCTGCAGGAGGAACACACGATCGCGTGCGCCCTGTGCGACAAGGTGTTCTGCTACAAGGCGAGCCACAAGGAGCACATGTTCAAGGTGCACCTCCCGCGATCgaagaaggagcagaaaaaggaGGACTGCGCCGGCAGTGCGCAGGGAAGGAATAAATTCAAATGCACCGTTTGCGATCGCCGGTTTTATTACAAGCGAGCACTGGAAGTTCACATGGGCGTGCATGACGCGTCGCTCGACGTGAATGTGCTGCACTTCTCGTGCAACTACTGCCCGGATACGTTCACCGAGGAGGAACAGCTTCAACAGCATGAAGCCGAGCACGTTTGCAACGGGACGACGGATTTCCACGAGAACATGAAGGCACTAGAGCAGTCGGAAAATCCAGAAAACGGTCAAGTGGACGGGAACTTCCGTTGTCCGCTGTGCTTCAAACGATTCGAGGATCAGCAGAGCCTCCGCGATCATCACAGGGCGCACCTGTGCGCGCGCACCGATTGCACCAAGTGCGAAAGGGCACGTGCGGACGAGTTCGATTTCAGCGCCACCACGTACGACCCGGAGGAGGACCGGCGGGAAACGGTATGCAACATTTGCCACCGCTCGTTGCCATCGTTCGAGCAGTTCCAGAACCACTTCCACTACCATACGTCCCGGGTGCCGTTCTACTGCTACCACTGCCGGGTGGAGTTTAGCGACAAGCGCGAACTGTACACTCACTCCAAGACGCACTCGCCACGTGTGCTGGAGTCGTACACGTGCGAGATCTGTGCGAAGGTGTTCTCGACAAAGGGCAACTTCAAGCGGCACCTAAAATCTCACGAAACGGTCCGAGCGTTCGCGTGCGACAGATGCTTCAAGCAGTACGACTATAAGAGCGCCCTCGAGTCTCACTTGAAGCGCTCCCACGGTATCGAGTTGTAG
Protein Sequence: MEYNAYNNKLYPGVSQPAPGSSGFFQTSAATGTFLKVPNLPLIKQESSTSIPTGNLGGTATPPVNYSQNQHYANHNDPPDPEKPLFYRKPFELQFMSHAYMQPHQQQFIQHQQHVPHHHHHHLQHQHQQSVPSHVQSQQQVQHVNLQHQQHQHAACFHDFTDHSNASSIGSSSVEPHAYVVHRAPVPEQLSKVAPMPFAMSISASAASASIIDEPATVTAQPTRFACDSCTKTFDTKSKLEKHSKTHLSCDDQVFKCRMCDKIFRTKSTLICHEKVHGESGVDNSFSCVECGKVFASDDKLQVHRRLHTGEKPYQCKVCLKCFNHQSNLIVHSRIHEKVKKALKCDRCSKVLDNEERLAIHMRLHTGEKPYKCSYCDKRFNHKSTVSTHEKAAHIAANSFKCARCHKTFNQKCQLQYHEKLQEEHTIACALCDKVFCYKASHKEHMFKVHLPRSKKEQKKEDCAGSAQGRNKFKCTVCDRRFYYKRALEVHMGVHDASLDVNVLHFSCNYCPDTFTEEEQLQQHEAEHVCNGTTDFHENMKALEQSENPENGQVDGNFRCPLCFKRFEDQQSLRDHHRAHLCARTDCTKCERARADEFDFSATTYDPEEDRRETVCNICHRSLPSFEQFQNHFHYHTSRVPFYCYHCRVEFSDKRELYTHSKTHSPRVLESYTCEICAKVFSTKGNFKRHLKSHETVRAFACDRCFKQYDYKSALESHLKRSHGIEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00094080;
90% Identity: -
80% Identity: -