Aali003569.1
Basic Information
- Insect
- Anopheles albimanus
- Gene Symbol
- -
- Assembly
- GCA_013758885.1
- Location
- NC:7782548-7811642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00063 0.03 14.1 4.0 1 23 247 269 247 269 0.97 2 11 0.007 0.33 10.8 9.0 1 23 275 297 275 297 0.96 3 11 0.00012 0.0055 16.5 6.5 1 23 303 325 303 325 0.98 4 11 0.00035 0.017 14.9 2.3 1 23 331 353 331 353 0.95 5 11 5.2e-06 0.00025 20.7 0.7 1 23 359 381 359 381 0.97 6 11 7.4e-05 0.0035 17.1 0.1 1 23 387 409 387 409 0.96 7 11 5.8e-05 0.0028 17.4 1.3 1 23 414 436 414 436 0.97 8 11 0.0015 0.073 12.9 0.1 6 23 447 465 442 465 0.89 9 11 0.00033 0.016 15.0 0.1 1 23 551 573 551 573 0.97 10 11 0.0059 0.28 11.1 5.3 1 23 689 711 689 711 0.97 11 11 0.005 0.24 11.3 4.9 5 23 724 742 716 742 0.92
Sequence Information
- Coding Sequence
- ATGTGTGCGGCACAGACGAACCCACCGTCCAACTTTAACTACGCCTGGGGCTATGGCGAGAATACGCGGGGCGAATCGGTCGTCGAGATAGCGCCCAACATCACCTACAATGTGGCAGCGGACGCATCAACGATGCCATACTTGCAGCTACCGGACGGTGCTAGCATAATAGTGCAGAAGGATGGCAAGGGAGCGATCACACACGGCAACAAAGCCGTCCGACGGATGATCGTCGTGAACGATCCGTCTACACTGCAGCAAACCGGAACACAGCGAATTATCACAACCAGTGGTACAGCGGCAACCGTCACAACGGGACATCAGAAGAAGCATGAAGTCATAACAAACGGAATCATCGAGACAAAGCCCAAAACGGCCATCCTAACGacgggtgccggtggtgcgttcATGTCTCCGATCGGACCGATACAGCTGACGGCGGAGGAATGTAACGATATCTTGATGAAgcgtgcggctgctgccgtcgccgccaacaaccagcaggccatcaccaacaacaccgaTGGTCATCATGCATCTATCTCGGTGCAGGTACAGAAGGTGATCCAGGGACTTGAGGAAGGGGACGATTCACAGGCCACCGCTACGACCCATCAGCTCAAGATTGAGCCATCGTTGAGCATTTCTCCGAAGTTGGAAGCGGTGGAGATTGATTACAATGATTACGTGCAGGAAGACACCACCCCAACACCGAACGTGGTACCAAAGGAGCGCCCATACTCGTGCGATCAGTGTGGTAAATCCTTCCTGTTGAAGCACCACCtcacaacacacgcacgcgtcCACACAGGCGAACGTCCGCATGTCTGCGTGCACTGTGGCAAGGACTTTGCTCACAAGCACTGTCTGAACacgcatctgctgctgcactcgacTGAACGGCCGTACCAGTGTCAGGAGTGCAAGAAGAGCTTCACGTTGAAGCATCATCTGCTGACGCATTCGCGAGTCCACTCGCGCGACCGGCCCTTCGTGTGCCAGGAGTGTGGTCGTTCGTTCCCGTTGAAGCGCCACCTGGTGACGCACAGCAAGTTCCATGCCGGTGAGCGACCGTACGTGTGCGAAGACTGCGGTGAAAGTTTCGCCCAAAAGGAGCATCTCGTGATGCACTCGCGGTTCCACGGTTCCGTCAATCCGTTCGTATGCGCTGACTGTGGCGCTACCTTCCCGCGTAAGTTCCAGCTGGTGAACCATGGCAAACTGCACGGCCGCATACCGCACTCGTGTACGCTGTGCGGTAAGGAGTTCCTCCAGAAGCGCACCCTTGCGGCCCATATGAGGATCCACACCGGTGACCAGCCTTTCCCATGTATTGCCTGCGGCGAGGGATTCCGCACCAAGTCGGAGCTGAACGCGCACAATCGACTCACCCATGGTGGCGTTAATCCGAACTCTTCTAACACGACCATCATCACGACCAACACGGTCGTCACATCCAatgcccaacagcagcaacagcagcagcaagcgcaggcacagaaccagcagcagcaacagcacatcgaggttcagcagctccagcaccaccagggtcagcagcaacaggtgcaGGATGTATCGAACGGAAACATTATCACGACGATCGCAACCACCGGTCAAGGGTCGCCCGATACGTCACCACGGCCACAGTATGCCTGCCGGGAGTGTGGCAGTGCCTTCAACAGTCGCGAAGCGTTGGCCCTCCATCTGCGTTTGCATACCGGTGATAAGAGCCTGATGACGGATCTGTGCGCCCTGACAGCCGCCCTACCCGGTCATCTGTTCCCAGCTGTCAACCAAGTACAAATTATCACCTCCTCGGGGCAAGTGGTACCGCAAATACAATCACAAAgcccaccgcagcagcagcaacaacagcagcaccatcagcagcagttgcaacATCAGACACAGGTGgtgcagcaacatcaaacgcAGACGGTagtacaacagcaacagacccaacagcagcagcagcaacagctacagcagcaacaacaacagcagcagcaacagcaacaacagcagcagtccgttGTTGTGTCAcaatcgaaaccaaaagcGCACGTGTGTCTCAGCTGCGGCAAAGGATTCGCCACCAAGCATGGTCTGTGTCTGCACAACAGGCGTCACCCGAACGGTGGATGTACGGTTCGGACAcacgtgtgtgagtgtggtaAGGCGTTCTTCCAGAAGAACCATctgatgctgcaccagcgTCAACATTTGGAGCAGAATCAACGTGGCGCTACTGGTGCTACCGGTGGTAATGCCGCTGCCAGTgggcagcaggcgcagcagcagcaacaacaagtgcAGACCGCTggcggccaacagcaacagctggtTGTGATTCAACAACCGAACCAGGAAGCActggttcagcagcagcaacagcagcagcaacaggcagctcagcaacagcagcaacaagcggcagcacaacagcagcatcagcttcaacagcagcaacagcagcagcagcaagccgttgccgtacagcaacagcagaaccagcagaacaatcagcagcacggcaTGCGCAACCTGGTGATTGCGAATCAGCCCGTCCAGGTGATGCAGGAGGGTAACGCGGCCCAAGTGATCAAGTACGAGATCATCCACGACACCTCGCGGCAGTCGAATGTCGAGTGA
- Protein Sequence
- MCAAQTNPPSNFNYAWGYGENTRGESVVEIAPNITYNVAADASTMPYLQLPDGASIIVQKDGKGAITHGNKAVRRMIVVNDPSTLQQTGTQRIITTSGTAATVTTGHQKKHEVITNGIIETKPKTAILTTGAGGAFMSPIGPIQLTAEECNDILMKRAAAAVAANNQQAITNNTDGHHASISVQVQKVIQGLEEGDDSQATATTHQLKIEPSLSISPKLEAVEIDYNDYVQEDTTPTPNVVPKERPYSCDQCGKSFLLKHHLTTHARVHTGERPHVCVHCGKDFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEDCGESFAQKEHLVMHSRFHGSVNPFVCADCGATFPRKFQLVNHGKLHGRIPHSCTLCGKEFLQKRTLAAHMRIHTGDQPFPCIACGEGFRTKSELNAHNRLTHGGVNPNSSNTTIITTNTVVTSNAQQQQQQQQAQAQNQQQQQHIEVQQLQHHQGQQQQVQDVSNGNIITTIATTGQGSPDTSPRPQYACRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHLFPAVNQVQIITSSGQVVPQIQSQSPPQQQQQQQHHQQQLQHQTQVVQQHQTQTVVQQQQTQQQQQQQLQQQQQQQQQQQQQQQSVVVSQSKPKAHVCLSCGKGFATKHGLCLHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLEQNQRGATGATGGNAAASGQQAQQQQQQVQTAGGQQQQLVVIQQPNQEALVQQQQQQQQQAAQQQQQQAAAQQQHQLQQQQQQQQQAVAVQQQQNQQNNQQHGMRNLVIANQPVQVMQEGNAAQVIKYEIIHDTSRQSNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00097245;
- 90% Identity
- iTF_00092964; iTF_00098543;
- 80% Identity
- -